Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11479 | 3' | -59.1 | NC_003085.1 | + | 41363 | 0.67 | 0.403071 |
Target: 5'- gGCCggGCCgCGUCACCcacgucaugacggUGGugGGUGa -3' miRNA: 3'- aCGGa-CGG-GUAGUGGa------------GCCugCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 31056 | 0.67 | 0.397653 |
Target: 5'- gGCCaGUCgCuUCGCCUCGG--GGUGCg -3' miRNA: 3'- aCGGaCGG-GuAGUGGAGCCugCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 33084 | 0.68 | 0.388729 |
Target: 5'- cUGCCaacuuUGCCCG-CGCCU-GGAaugccuCGGUGCc -3' miRNA: 3'- -ACGG-----ACGGGUaGUGGAgCCU------GCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 5709 | 0.68 | 0.388729 |
Target: 5'- aGCCcgcGCCCAcCACCggggCGGACccggcucgGGUGUc -3' miRNA: 3'- aCGGa--CGGGUaGUGGa---GCCUG--------CCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 18932 | 0.68 | 0.379938 |
Target: 5'- cGCCaugaGCgCCAUCGCCUacagggcccCGcGACGGUGg -3' miRNA: 3'- aCGGa---CG-GGUAGUGGA---------GC-CUGCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 45959 | 0.68 | 0.379938 |
Target: 5'- aGCUUGUacagCGUCGCCUUGGgGCGGcagaUGCg -3' miRNA: 3'- aCGGACGg---GUAGUGGAGCC-UGCC----ACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 6537 | 0.68 | 0.37128 |
Target: 5'- cGCCgUGgCCAUCAUC-CGGucaACGGUGg -3' miRNA: 3'- aCGG-ACgGGUAGUGGaGCC---UGCCACg -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 5796 | 0.68 | 0.37128 |
Target: 5'- cGCCgugGCCUu---CgUCGGAgCGGUGCg -3' miRNA: 3'- aCGGa--CGGGuaguGgAGCCU-GCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 19069 | 0.69 | 0.338017 |
Target: 5'- cGCCUguuucuccaGCCCAggCACCgauggccCGGGCGGgaUGCu -3' miRNA: 3'- aCGGA---------CGGGUa-GUGGa------GCCUGCC--ACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 21686 | 0.69 | 0.337213 |
Target: 5'- cGCCUccaggacgaggugGCCCGcuUCGCCUCGGACauccaGCg -3' miRNA: 3'- aCGGA-------------CGGGU--AGUGGAGCCUGcca--CG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 37876 | 0.69 | 0.336411 |
Target: 5'- cGcCCUGCCCcguUCcaGCCaggcgcgggcaGGACGGUGCg -3' miRNA: 3'- aC-GGACGGGu--AG--UGGag---------CCUGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 20758 | 0.69 | 0.330046 |
Target: 5'- gGCugCUGCCCG--GCUUCGGGCuGUGCc -3' miRNA: 3'- aCG--GACGGGUagUGGAGCCUGcCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 858 | 0.69 | 0.330046 |
Target: 5'- cGCgCUGCCCGaaggCACUccgCaGACGGUGUg -3' miRNA: 3'- aCG-GACGGGUa---GUGGa--GcCUGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 8178 | 0.69 | 0.314525 |
Target: 5'- gUGCUUGCgCAgCGCUUCGGcgucuCGGUGUc -3' miRNA: 3'- -ACGGACGgGUaGUGGAGCCu----GCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 26653 | 0.69 | 0.314525 |
Target: 5'- aGUCggGgCCGUCGCCUCcuGGGCGGgaGCg -3' miRNA: 3'- aCGGa-CgGGUAGUGGAG--CCUGCCa-CG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 37130 | 0.69 | 0.314525 |
Target: 5'- cGCgUGCCC-UUGCCcagguUCGGGuCGGUGUg -3' miRNA: 3'- aCGgACGGGuAGUGG-----AGCCU-GCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 40556 | 0.69 | 0.306974 |
Target: 5'- cGUCgagGCgCAagGCCUUGGugGCGGUGCg -3' miRNA: 3'- aCGGa--CGgGUagUGGAGCC--UGCCACG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 11576 | 0.69 | 0.306974 |
Target: 5'- cGuCCUGCCCG-CGCCUggcUGGaACGGgGCa -3' miRNA: 3'- aC-GGACGGGUaGUGGA---GCC-UGCCaCG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 24106 | 0.69 | 0.306974 |
Target: 5'- gGCgUGCCCGUCACCgucCGGAa-GcGCg -3' miRNA: 3'- aCGgACGGGUAGUGGa--GCCUgcCaCG- -5' |
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11479 | 3' | -59.1 | NC_003085.1 | + | 45748 | 0.7 | 0.292289 |
Target: 5'- cUGCCUGCgUCGUCACCaccagcacCGGACGcG-GCg -3' miRNA: 3'- -ACGGACG-GGUAGUGGa-------GCCUGC-CaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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