miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11486 5' -56.3 NC_003085.1 + 42318 0.66 0.651352
Target:  5'- cGAUG-CgGAuuCGUCGGCUGCGguGu- -3'
miRNA:   3'- aCUGCaGgUU--GCAGCCGACGCguCuc -5'
11486 5' -56.3 NC_003085.1 + 27909 0.66 0.650253
Target:  5'- gGGCGUCCAcgagcucGCGcCGGUagucaCGCAGGGc -3'
miRNA:   3'- aCUGCAGGU-------UGCaGCCGac---GCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 40700 0.66 0.646952
Target:  5'- cGACGUCCGggugcuggacGCGcCGGUggaccucucgccgGCGcCGGAGg -3'
miRNA:   3'- aCUGCAGGU----------UGCaGCCGa------------CGC-GUCUC- -5'
11486 5' -56.3 NC_003085.1 + 46925 0.66 0.640346
Target:  5'- aGGCGgcaCAGguUCGGCgcGCGCAGGGg -3'
miRNA:   3'- aCUGCag-GUUgcAGCCGa-CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 48022 0.66 0.629333
Target:  5'- aUGGCGUCUucaccuucagGGCGcgcUUGGCUGUGguGAc -3'
miRNA:   3'- -ACUGCAGG----------UUGC---AGCCGACGCguCUc -5'
11486 5' -56.3 NC_003085.1 + 9669 0.66 0.62713
Target:  5'- gGACGgccgCCAACGUcgagcacCGGCUGgcgucccUGCAGAc -3'
miRNA:   3'- aCUGCa---GGUUGCA-------GCCGAC-------GCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 39370 0.66 0.607322
Target:  5'- cGGCGguUCCGACGcCGGCggggGCucauGCGGAa -3'
miRNA:   3'- aCUGC--AGGUUGCaGCCGa---CG----CGUCUc -5'
11486 5' -56.3 NC_003085.1 + 46117 0.66 0.607322
Target:  5'- gGGCGUCgGggaGCGUCGuCUGUGCGGcGa -3'
miRNA:   3'- aCUGCAGgU---UGCAGCcGACGCGUCuC- -5'
11486 5' -56.3 NC_003085.1 + 22902 0.66 0.607322
Target:  5'- cGAC-UCCGGCGgaGGCUGC-CGGGGc -3'
miRNA:   3'- aCUGcAGGUUGCagCCGACGcGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 22480 0.66 0.596345
Target:  5'- -cGCGguagcCCAGC--CGGCUGCGCAGGc -3'
miRNA:   3'- acUGCa----GGUUGcaGCCGACGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 47368 0.66 0.596345
Target:  5'- aUGGCG-CCGagguGCGgCGGCUGCGCu--- -3'
miRNA:   3'- -ACUGCaGGU----UGCaGCCGACGCGucuc -5'
11486 5' -56.3 NC_003085.1 + 46848 0.66 0.595248
Target:  5'- cGACG-CCAGCGUCugGGCcuugGCcucggagGCAGGGg -3'
miRNA:   3'- aCUGCaGGUUGCAG--CCGa---CG-------CGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 47158 0.67 0.585397
Target:  5'- gUGGCGaggcaggCCAGCGcCGuGCUGC-CGGAGc -3'
miRNA:   3'- -ACUGCa------GGUUGCaGC-CGACGcGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 43038 0.67 0.581029
Target:  5'- gGGCcguGUCgAGCGgcccgcuggggaaCGGCUGCGUGGAGa -3'
miRNA:   3'- aCUG---CAGgUUGCa------------GCCGACGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 11603 0.67 0.563629
Target:  5'- cGACGUCUGGC--CGGCcaGCGCAGGc -3'
miRNA:   3'- aCUGCAGGUUGcaGCCGa-CGCGUCUc -5'
11486 5' -56.3 NC_003085.1 + 34274 0.67 0.560381
Target:  5'- cGGCG-CUGGCGcacCGGCUcagccgggccgucaGCGCAGAGg -3'
miRNA:   3'- aCUGCaGGUUGCa--GCCGA--------------CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 39915 0.67 0.551746
Target:  5'- aGAag-CCAGCGUCGGCcGCGUcgugcacuaccagGGAGc -3'
miRNA:   3'- aCUgcaGGUUGCAGCCGaCGCG-------------UCUC- -5'
11486 5' -56.3 NC_003085.1 + 33204 0.67 0.542081
Target:  5'- gGGCGUCCugGAgG-CGGCgGCGCAGc- -3'
miRNA:   3'- aCUGCAGG--UUgCaGCCGaCGCGUCuc -5'
11486 5' -56.3 NC_003085.1 + 11996 0.68 0.528222
Target:  5'- cGGCGU-CAGCGUguucgugaaugcggUGGCggGCGCGGGGu -3'
miRNA:   3'- aCUGCAgGUUGCA--------------GCCGa-CGCGUCUC- -5'
11486 5' -56.3 NC_003085.1 + 9974 0.68 0.504037
Target:  5'- cGGCuUCCGagcgccucgacgcgcACGUCGGCaggGgGCGGAGg -3'
miRNA:   3'- aCUGcAGGU---------------UGCAGCCGa--CgCGUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.