Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11490 | 3' | -53.6 | NC_003085.1 | + | 37756 | 0.66 | 0.767656 |
Target: 5'- uCGGCguccuccuGCUCGcccaUGAACUGGuAGCGGCa-- -3' miRNA: 3'- -GUCG--------UGAGC----ACUUGACC-UCGCUGacg -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 1327 | 0.66 | 0.767656 |
Target: 5'- uGGCACUgCGaUGGcGCUGGAGUacgGACgGCu -3' miRNA: 3'- gUCGUGA-GC-ACU-UGACCUCG---CUGaCG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 32034 | 0.66 | 0.735912 |
Target: 5'- cCGGCGCg-GUGAug-GGGGCGGCgagugGCc -3' miRNA: 3'- -GUCGUGagCACUugaCCUCGCUGa----CG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 11312 | 0.66 | 0.735912 |
Target: 5'- uGGCGCUUGUGGAC--GAG-GACUGg -3' miRNA: 3'- gUCGUGAGCACUUGacCUCgCUGACg -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 40976 | 0.67 | 0.725096 |
Target: 5'- cCAGCGCUCGcaagcggcaaGGGCUGGcccAGCGGCg-- -3' miRNA: 3'- -GUCGUGAGCa---------CUUGACC---UCGCUGacg -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 186 | 0.67 | 0.703185 |
Target: 5'- gCAGCAuCUCG-GAG-UGGAcGCGGCgcgGCg -3' miRNA: 3'- -GUCGU-GAGCaCUUgACCU-CGCUGa--CG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 8330 | 0.67 | 0.680984 |
Target: 5'- gGGCACUUccucaucGGGCgcgUGGAGCGGCUGg -3' miRNA: 3'- gUCGUGAGca-----CUUG---ACCUCGCUGACg -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 6658 | 0.68 | 0.666443 |
Target: 5'- uGGCgucccaACUCGUGGacGCcucccugauggcccUGGAGCGGCUuGCg -3' miRNA: 3'- gUCG------UGAGCACU--UG--------------ACCUCGCUGA-CG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 5858 | 0.68 | 0.658588 |
Target: 5'- -uGCACUCG-GGA-UGGcAGCGcCUGCg -3' miRNA: 3'- guCGUGAGCaCUUgACC-UCGCuGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 18084 | 0.68 | 0.636089 |
Target: 5'- gCGGCAgUgGgaguUGGcCUGGaAGCGGCUGCg -3' miRNA: 3'- -GUCGUgAgC----ACUuGACC-UCGCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 15176 | 0.68 | 0.624829 |
Target: 5'- -cGaCGCUCGgcgGAACacaaGGGCGGCUGCu -3' miRNA: 3'- guC-GUGAGCa--CUUGac--CUCGCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 1226 | 0.69 | 0.613575 |
Target: 5'- -cGCGCUgcUGgagGAGUUGGAGgGGCUGCg -3' miRNA: 3'- guCGUGA--GCa--CUUGACCUCgCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 4566 | 0.69 | 0.587771 |
Target: 5'- -cGgACUCGUGGACUgcaauugcaaucaaGGuuGCGAUUGCg -3' miRNA: 3'- guCgUGAGCACUUGA--------------CCu-CGCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 39032 | 0.69 | 0.568825 |
Target: 5'- aCGGCAUgCGUGGGC--GAGCG-CUGCg -3' miRNA: 3'- -GUCGUGaGCACUUGacCUCGCuGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 47924 | 0.69 | 0.55775 |
Target: 5'- -cGCACUCaGUGAcgagucGCUGGuacuCGGCUGCc -3' miRNA: 3'- guCGUGAG-CACU------UGACCuc--GCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 47351 | 0.71 | 0.49287 |
Target: 5'- -uGUACUUGUGGGCgccgaUGGcgccgaggugcGGCGGCUGCg -3' miRNA: 3'- guCGUGAGCACUUG-----ACC-----------UCGCUGACG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 7390 | 0.71 | 0.472003 |
Target: 5'- aCGGCGCccgCGUGAACUGGcacgAGUccGACUGg -3' miRNA: 3'- -GUCGUGa--GCACUUGACC----UCG--CUGACg -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 42718 | 0.73 | 0.384223 |
Target: 5'- gCGGCACcucaggCGUGGGCgucGGGGCGAUgcggGCg -3' miRNA: 3'- -GUCGUGa-----GCACUUGa--CCUCGCUGa---CG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 9016 | 0.73 | 0.348835 |
Target: 5'- uGGCGCUaCGUaGGGCUGGAcgGCGGCagGCa -3' miRNA: 3'- gUCGUGA-GCA-CUUGACCU--CGCUGa-CG- -5' |
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11490 | 3' | -53.6 | NC_003085.1 | + | 42096 | 0.73 | 0.348835 |
Target: 5'- uCGGC-CUCGU--ACUGGAGCGGC-GCc -3' miRNA: 3'- -GUCGuGAGCAcuUGACCUCGCUGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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