miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 40952 0.69 0.34589
Target:  5'- cCUGCGcCCGCuggugcGCGUCGUacUGGCggGCCAGc -3'
miRNA:   3'- -GACGUaGGCG------UGCAGCA--GCCG--CGGUC- -5'
11490 5' -59 NC_003085.1 + 42017 0.68 0.354105
Target:  5'- -gGCGUCgGCACGgaCGagGGCGCCu- -3'
miRNA:   3'- gaCGUAGgCGUGCa-GCagCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 48735 0.68 0.354105
Target:  5'- -cGCcuGUCCGUgaGCGgcgCGUCaGGCGCCAc -3'
miRNA:   3'- gaCG--UAGGCG--UGCa--GCAG-CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 20770 0.68 0.370944
Target:  5'- -cGCAgcUCCGCGCGUUGUCcGCGgggaugaugcCCAGu -3'
miRNA:   3'- gaCGU--AGGCGUGCAGCAGcCGC----------GGUC- -5'
11490 5' -59 NC_003085.1 + 937 0.68 0.370944
Target:  5'- -aGCGUCgGC-CG-CGUCcgGGUGCCAGa -3'
miRNA:   3'- gaCGUAGgCGuGCaGCAG--CCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 8584 0.68 0.370944
Target:  5'- -gGCAUgCCGC-CGUCGUCcGaGCGCguGg -3'
miRNA:   3'- gaCGUA-GGCGuGCAGCAG-C-CGCGguC- -5'
11490 5' -59 NC_003085.1 + 10608 0.68 0.379566
Target:  5'- gCUGUcgCCGCGCGcCGUCGcagugggacgacGCGgCAGu -3'
miRNA:   3'- -GACGuaGGCGUGCaGCAGC------------CGCgGUC- -5'
11490 5' -59 NC_003085.1 + 14957 0.68 0.397208
Target:  5'- gCUGUcgCCGCACGgucCGU-GGUGCCc- -3'
miRNA:   3'- -GACGuaGGCGUGCa--GCAgCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 46443 0.68 0.397208
Target:  5'- gUGCAccgUCUGgGCGUCGUCcGuGCGCcCAGc -3'
miRNA:   3'- gACGU---AGGCgUGCAGCAG-C-CGCG-GUC- -5'
11490 5' -59 NC_003085.1 + 20603 0.68 0.397208
Target:  5'- -gGCAgcgCCGCGgaaGUCGggCGGCGCgGGu -3'
miRNA:   3'- gaCGUa--GGCGUg--CAGCa-GCCGCGgUC- -5'
11490 5' -59 NC_003085.1 + 3847 0.68 0.397208
Target:  5'- aCUGCccAUCCaggaccacgGCGCGUCGaCGGCGCg-- -3'
miRNA:   3'- -GACG--UAGG---------CGUGCAGCaGCCGCGguc -5'
11490 5' -59 NC_003085.1 + 34359 0.67 0.415368
Target:  5'- gCUcCAUCCGCuCGUCGagggugaGGCGCCGu -3'
miRNA:   3'- -GAcGUAGGCGuGCAGCag-----CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 41553 0.67 0.415368
Target:  5'- gCUGCcgCCGCGgcggcaGUCG-CGGgaGCCAGa -3'
miRNA:   3'- -GACGuaGGCGUg-----CAGCaGCCg-CGGUC- -5'
11490 5' -59 NC_003085.1 + 20952 0.67 0.434029
Target:  5'- -cGCGUCUGCACGagGUgCGGUgGCUGGc -3'
miRNA:   3'- gaCGUAGGCGUGCagCA-GCCG-CGGUC- -5'
11490 5' -59 NC_003085.1 + 36958 0.67 0.44354
Target:  5'- -gGCAgggCCGCGgGgccaUGUUGGCGCCGc -3'
miRNA:   3'- gaCGUa--GGCGUgCa---GCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 29257 0.67 0.44354
Target:  5'- -gGCGUCCGCGuCGUgGcUGGC-CCAGu -3'
miRNA:   3'- gaCGUAGGCGU-GCAgCaGCCGcGGUC- -5'
11490 5' -59 NC_003085.1 + 49287 0.67 0.44354
Target:  5'- cCUGUggCUGCuGCGUCGcgUCGGCGucCCGGg -3'
miRNA:   3'- -GACGuaGGCG-UGCAGC--AGCCGC--GGUC- -5'
11490 5' -59 NC_003085.1 + 32461 0.66 0.462906
Target:  5'- --cCAUCCGCGCuucucgucGcCGUCGGCGUCGc -3'
miRNA:   3'- gacGUAGGCGUG--------CaGCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 18963 0.66 0.462906
Target:  5'- cCUGCAUCUGgcUGUCGUCGaguccaggcgucGCGuCCAGg -3'
miRNA:   3'- -GACGUAGGCguGCAGCAGC------------CGC-GGUC- -5'
11490 5' -59 NC_003085.1 + 20347 0.66 0.462906
Target:  5'- cCUGguUCCGCgccGCGUCGcCGcugcugaCGCCGGg -3'
miRNA:   3'- -GACguAGGCG---UGCAGCaGCc------GCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.