miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11490 5' -59 NC_003085.1 + 49287 0.67 0.44354
Target:  5'- cCUGUggCUGCuGCGUCGcgUCGGCGucCCGGg -3'
miRNA:   3'- -GACGuaGGCG-UGCAGC--AGCCGC--GGUC- -5'
11490 5' -59 NC_003085.1 + 48735 0.68 0.354105
Target:  5'- -cGCcuGUCCGUgaGCGgcgCGUCaGGCGCCAc -3'
miRNA:   3'- gaCG--UAGGCG--UGCa--GCAG-CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 46443 0.68 0.397208
Target:  5'- gUGCAccgUCUGgGCGUCGUCcGuGCGCcCAGc -3'
miRNA:   3'- gACGU---AGGCgUGCAGCAG-C-CGCG-GUC- -5'
11490 5' -59 NC_003085.1 + 46118 0.66 0.492761
Target:  5'- -gGCGUCgGggaGCGUCGUCugugcGGCGaCCAGc -3'
miRNA:   3'- gaCGUAGgCg--UGCAGCAG-----CCGC-GGUC- -5'
11490 5' -59 NC_003085.1 + 44886 0.69 0.321301
Target:  5'- -cGCAUCCGCACGucugcuUCGUCuccucauGGCGUCc- -3'
miRNA:   3'- gaCGUAGGCGUGC------AGCAG-------CCGCGGuc -5'
11490 5' -59 NC_003085.1 + 43892 0.72 0.210267
Target:  5'- -gGCGUagacguggCGCAcCGUCG-CGGCGCCAGg -3'
miRNA:   3'- gaCGUAg-------GCGU-GCAGCaGCCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 43872 0.66 0.502909
Target:  5'- cCUGCAUCCGgGCaaGUaGUgGcGUGCCGGg -3'
miRNA:   3'- -GACGUAGGCgUG--CAgCAgC-CGCGGUC- -5'
11490 5' -59 NC_003085.1 + 43202 0.66 0.482708
Target:  5'- -cGCAUCCcacgGCgGCGUCGUguaGGCGUCGa -3'
miRNA:   3'- gaCGUAGG----CG-UGCAGCAg--CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 42017 0.68 0.354105
Target:  5'- -gGCGUCgGCACGgaCGagGGCGCCu- -3'
miRNA:   3'- gaCGUAGgCGUGCa-GCagCCGCGGuc -5'
11490 5' -59 NC_003085.1 + 41553 0.67 0.415368
Target:  5'- gCUGCcgCCGCGgcggcaGUCG-CGGgaGCCAGa -3'
miRNA:   3'- -GACGuaGGCGUg-----CAGCaGCCg-CGGUC- -5'
11490 5' -59 NC_003085.1 + 40952 0.69 0.34589
Target:  5'- cCUGCGcCCGCuggugcGCGUCGUacUGGCggGCCAGc -3'
miRNA:   3'- -GACGUaGGCG------UGCAGCA--GCCG--CGGUC- -5'
11490 5' -59 NC_003085.1 + 40482 0.66 0.492761
Target:  5'- cCUGUcgCUGCuggcggGCGUCGUCGa-GCCGGa -3'
miRNA:   3'- -GACGuaGGCG------UGCAGCAGCcgCGGUC- -5'
11490 5' -59 NC_003085.1 + 36958 0.67 0.44354
Target:  5'- -gGCAgggCCGCGgGgccaUGUUGGCGCCGc -3'
miRNA:   3'- gaCGUa--GGCGUgCa---GCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 35644 0.77 0.101389
Target:  5'- -gGCGUCUGCACGUCa-UGGCGCCAc -3'
miRNA:   3'- gaCGUAGGCGUGCAGcaGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 34359 0.67 0.415368
Target:  5'- gCUcCAUCCGCuCGUCGagggugaGGCGCCGu -3'
miRNA:   3'- -GAcGUAGGCGuGCAGCag-----CCGCGGUc -5'
11490 5' -59 NC_003085.1 + 33014 0.7 0.292256
Target:  5'- aCUGCcgUCGCcucgaAUGaCGUCGGCGCCuGg -3'
miRNA:   3'- -GACGuaGGCG-----UGCaGCAGCCGCGGuC- -5'
11490 5' -59 NC_003085.1 + 32461 0.66 0.462906
Target:  5'- --cCAUCCGCGCuucucgucGcCGUCGGCGUCGc -3'
miRNA:   3'- gacGUAGGCGUG--------CaGCAGCCGCGGUc -5'
11490 5' -59 NC_003085.1 + 31782 0.7 0.278175
Target:  5'- cCUGCcuggCCGCGuCGUCGgucUCaGCGCCAGc -3'
miRNA:   3'- -GACGua--GGCGU-GCAGC---AGcCGCGGUC- -5'
11490 5' -59 NC_003085.1 + 29534 0.69 0.329874
Target:  5'- -aGCGUCUugGCGCGggCGUCGuGCGgCAGg -3'
miRNA:   3'- gaCGUAGG--CGUGCa-GCAGC-CGCgGUC- -5'
11490 5' -59 NC_003085.1 + 29257 0.67 0.44354
Target:  5'- -gGCGUCCGCGuCGUgGcUGGC-CCAGu -3'
miRNA:   3'- gaCGUAGGCGU-GCAgCaGCCGcGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.