miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11498 3' -53 NC_003085.1 + 8840 0.66 0.853868
Target:  5'- uGCGCGAGCaggaGggGCggccaugaCGUG-CAUCGGc -3'
miRNA:   3'- cCGUGCUCG----CuuUGa-------GCACgGUAGCC- -5'
11498 3' -53 NC_003085.1 + 26124 0.66 0.853868
Target:  5'- cGGC-CG-GCGgcGCUUGgccgGCCAgagCGGc -3'
miRNA:   3'- -CCGuGCuCGCuuUGAGCa---CGGUa--GCC- -5'
11498 3' -53 NC_003085.1 + 19199 0.66 0.845264
Target:  5'- uGGCACGAGCaGGACUUcaccuucaCCGUCGa -3'
miRNA:   3'- -CCGUGCUCGcUUUGAGcac-----GGUAGCc -5'
11498 3' -53 NC_003085.1 + 18014 0.66 0.845264
Target:  5'- cGGCGCGAGgcCGua---CGUGCCAUCc- -3'
miRNA:   3'- -CCGUGCUC--GCuuugaGCACGGUAGcc -5'
11498 3' -53 NC_003085.1 + 17375 0.66 0.827382
Target:  5'- cGCcaGCGAGCaGGACUCGUGUUggCGa -3'
miRNA:   3'- cCG--UGCUCGcUUUGAGCACGGuaGCc -5'
11498 3' -53 NC_003085.1 + 29541 0.66 0.827382
Target:  5'- uGGCGCGGGCGucguGCggcaggaCGUGCUugagguagCGGu -3'
miRNA:   3'- -CCGUGCUCGCuu--UGa------GCACGGua------GCC- -5'
11498 3' -53 NC_003085.1 + 3356 0.66 0.827382
Target:  5'- cGCAUGGGUGAgccagaauccGACccagCGgcucGCCGUCGGu -3'
miRNA:   3'- cCGUGCUCGCU----------UUGa---GCa---CGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 37896 0.66 0.818123
Target:  5'- aGGCGCGGGCaGGACg-GUG-CGUUGGc -3'
miRNA:   3'- -CCGUGCUCGcUUUGagCACgGUAGCC- -5'
11498 3' -53 NC_003085.1 + 7407 0.66 0.808664
Target:  5'- uGGCACGAGUccGACUgGgGCCcuccCGGg -3'
miRNA:   3'- -CCGUGCUCGcuUUGAgCaCGGua--GCC- -5'
11498 3' -53 NC_003085.1 + 37772 0.66 0.808664
Target:  5'- uGGUAC-AGCGaAGAC-CGUcaacauccucGCCAUCGGc -3'
miRNA:   3'- -CCGUGcUCGC-UUUGaGCA----------CGGUAGCC- -5'
11498 3' -53 NC_003085.1 + 5284 0.67 0.802898
Target:  5'- aGCACGGGCGAAgaagacgaagugaagGCgCGcGCCGUCc- -3'
miRNA:   3'- cCGUGCUCGCUU---------------UGaGCaCGGUAGcc -5'
11498 3' -53 NC_003085.1 + 32904 0.67 0.799017
Target:  5'- uGGC-CGGGCGccacgcaguuGGAgUCGcUGCCuUCGGg -3'
miRNA:   3'- -CCGuGCUCGC----------UUUgAGC-ACGGuAGCC- -5'
11498 3' -53 NC_003085.1 + 41471 0.67 0.799017
Target:  5'- gGGCGCGGGUGAAguaccGCgccagCGcUGCCuacCGGc -3'
miRNA:   3'- -CCGUGCUCGCUU-----UGa----GC-ACGGua-GCC- -5'
11498 3' -53 NC_003085.1 + 35577 0.67 0.789192
Target:  5'- cGGUugGAGCaguaGAGCUUGcggcuUGCCGggcgCGGg -3'
miRNA:   3'- -CCGugCUCGc---UUUGAGC-----ACGGUa---GCC- -5'
11498 3' -53 NC_003085.1 + 1584 0.67 0.789192
Target:  5'- cGGCGCG-GCGu-ACgCGUGCCGUg-- -3'
miRNA:   3'- -CCGUGCuCGCuuUGaGCACGGUAgcc -5'
11498 3' -53 NC_003085.1 + 44797 0.67 0.789192
Target:  5'- cGGCGCc-GUGAAagGCUCGccucUGCCAcCGGg -3'
miRNA:   3'- -CCGUGcuCGCUU--UGAGC----ACGGUaGCC- -5'
11498 3' -53 NC_003085.1 + 4525 0.67 0.779201
Target:  5'- gGGCACG-GCGAuACcuccCGUGCgGUCu- -3'
miRNA:   3'- -CCGUGCuCGCUuUGa---GCACGgUAGcc -5'
11498 3' -53 NC_003085.1 + 29424 0.67 0.769054
Target:  5'- gGGCGCGGGCGGcGGCaa-UGCCGUCc- -3'
miRNA:   3'- -CCGUGCUCGCU-UUGagcACGGUAGcc -5'
11498 3' -53 NC_003085.1 + 38286 0.67 0.762897
Target:  5'- uGGCGCGAGCucgggcuuugccuguGAcggccaguuGGCgUCGUGCCuaaagcUCGGg -3'
miRNA:   3'- -CCGUGCUCG---------------CU---------UUG-AGCACGGu-----AGCC- -5'
11498 3' -53 NC_003085.1 + 37109 0.67 0.762897
Target:  5'- cGGCAC-AGCGAcaccauguGGCgCGUGCCcuugcccagguucggGUCGGu -3'
miRNA:   3'- -CCGUGcUCGCU--------UUGaGCACGG---------------UAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.