miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 3' -50.9 NC_003085.1 + 5664 1.13 0.001492
Target:  5'- aCAAGAUGACGGACACGCUCAUGACGCu -3'
miRNA:   3'- -GUUCUACUGCCUGUGCGAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 45594 0.78 0.300431
Target:  5'- -cAGAcGGCGGGCGCGC-CGUcGACGCg -3'
miRNA:   3'- guUCUaCUGCCUGUGCGaGUA-CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 22623 0.75 0.413888
Target:  5'- gAGGGUGGCGGgggcACACGC-C-UGGCGCg -3'
miRNA:   3'- gUUCUACUGCC----UGUGCGaGuACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 21584 0.75 0.423647
Target:  5'- -cAGGUGACGGGCAUGgCcgacaucaugCGUGGCGCg -3'
miRNA:   3'- guUCUACUGCCUGUGC-Ga---------GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 17009 0.75 0.433543
Target:  5'- aCGAGAagcgcgGAUGGGCGCuGCUCGcguaUGACGCc -3'
miRNA:   3'- -GUUCUa-----CUGCCUGUG-CGAGU----ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 12019 0.75 0.443572
Target:  5'- --cGGUGGCGGGCgcgggguugGCGCUCGcuagccgcacUGGCGCa -3'
miRNA:   3'- guuCUACUGCCUG---------UGCGAGU----------ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 14873 0.74 0.474417
Target:  5'- gCAAGGUGACGGACGaGCagGUGuuCGCc -3'
miRNA:   3'- -GUUCUACUGCCUGUgCGagUACu-GCG- -5'
11504 3' -50.9 NC_003085.1 + 47476 0.74 0.474417
Target:  5'- -uAGAagugGACGGGC-UGCUCAUGcACGCg -3'
miRNA:   3'- guUCUa---CUGCCUGuGCGAGUAC-UGCG- -5'
11504 3' -50.9 NC_003085.1 + 35615 0.74 0.506299
Target:  5'- gCGAGGUGGaaGACACGUUugacguugagcaCAUGACGCu -3'
miRNA:   3'- -GUUCUACUgcCUGUGCGA------------GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 24191 0.74 0.506299
Target:  5'- uGAGGUaGACGGGCGCGC-CGacgacGACGCc -3'
miRNA:   3'- gUUCUA-CUGCCUGUGCGaGUa----CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 33358 0.74 0.510621
Target:  5'- aCGAGGaaUGGCGGgacagacaccGCGCGCUCAgccacugucgcaacaUGACGCc -3'
miRNA:   3'- -GUUCU--ACUGCC----------UGUGCGAGU---------------ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 35419 0.73 0.517131
Target:  5'- -----cGACGGACACGC-CGUcGCGCa -3'
miRNA:   3'- guucuaCUGCCUGUGCGaGUAcUGCG- -5'
11504 3' -50.9 NC_003085.1 + 17758 0.72 0.580398
Target:  5'- gGAGAUGGCGcgagagauugcugaGGCcCGCUCAUGACa- -3'
miRNA:   3'- gUUCUACUGC--------------CUGuGCGAGUACUGcg -5'
11504 3' -50.9 NC_003085.1 + 14625 0.72 0.59396
Target:  5'- -cGGAUGACGccuucuuGACGCGCUCGgucaGCGCc -3'
miRNA:   3'- guUCUACUGC-------CUGUGCGAGUac--UGCG- -5'
11504 3' -50.9 NC_003085.1 + 38247 0.72 0.595093
Target:  5'- uGGGcUGACGGuuGCACG-UCAUGGCGUg -3'
miRNA:   3'- gUUCuACUGCC--UGUGCgAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 25365 0.72 0.606437
Target:  5'- --cGGUGACGGGCACGC-CGacGGCGg -3'
miRNA:   3'- guuCUACUGCCUGUGCGaGUa-CUGCg -5'
11504 3' -50.9 NC_003085.1 + 29158 0.72 0.617805
Target:  5'- gAAGGUGGCGGGCGCGUUgGgcACGg -3'
miRNA:   3'- gUUCUACUGCCUGUGCGAgUacUGCg -5'
11504 3' -50.9 NC_003085.1 + 594 0.72 0.622356
Target:  5'- gCAGGGUGucuCgacuggcgccguccuGGGCGCGCUCGaggcUGGCGCg -3'
miRNA:   3'- -GUUCUACu--G---------------CCUGUGCGAGU----ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 41557 0.71 0.640569
Target:  5'- -----cGACaGGACGCGCUCGccccGACGCc -3'
miRNA:   3'- guucuaCUG-CCUGUGCGAGUa---CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5930 0.71 0.674626
Target:  5'- aCGAGAccacgaaGACGGACACGCcgCGgcaGAUGCc -3'
miRNA:   3'- -GUUCUa------CUGCCUGUGCGa-GUa--CUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.