miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 3' -50.9 NC_003085.1 + 2141 0.68 0.813411
Target:  5'- gAGGAcGGCGGccccCGC-CUCAUGACGUc -3'
miRNA:   3'- gUUCUaCUGCCu---GUGcGAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 13793 0.69 0.745563
Target:  5'- gCGAGcGUGACgccagucugcguggaGGugGCGC-CAUGACGUg -3'
miRNA:   3'- -GUUC-UACUG---------------CCugUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 13582 0.69 0.76264
Target:  5'- -uGGAcGugGGcaccggagGCGCGC-CAUGACGCc -3'
miRNA:   3'- guUCUaCugCC--------UGUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 14672 0.69 0.77313
Target:  5'- gCAAGGacuUGGAgGCGC-CGUGGCGCu -3'
miRNA:   3'- -GUUCUacuGCCUgUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 34755 0.69 0.783465
Target:  5'- gGAGGUGACGGGuguucccacuuCGgGUUCGgcaGGCGCa -3'
miRNA:   3'- gUUCUACUGCCU-----------GUgCGAGUa--CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 15113 0.69 0.783465
Target:  5'- aCGAGcgGAUGGAgcgcCGCGCcgCGUGGUGCg -3'
miRNA:   3'- -GUUCuaCUGCCU----GUGCGa-GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 11191 0.68 0.792623
Target:  5'- gCGAGAccuGCGGaaggaagGCACGC-CAUGACGUg -3'
miRNA:   3'- -GUUCUac-UGCC-------UGUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 11779 0.68 0.793631
Target:  5'- -----cGGCGGcgcCGCGCUCcgGGCGUg -3'
miRNA:   3'- guucuaCUGCCu--GUGCGAGuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 33422 0.68 0.793631
Target:  5'- cCGAGGUGAUGGGCAgGCagGUcACGg -3'
miRNA:   3'- -GUUCUACUGCCUGUgCGagUAcUGCg -5'
11504 3' -50.9 NC_003085.1 + 47999 0.7 0.708294
Target:  5'- gGAGGgagGACGcGGCGCaGgUCAUGGCGUc -3'
miRNA:   3'- gUUCUa--CUGC-CUGUG-CgAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 36125 0.7 0.701607
Target:  5'- aCAGGAagaccgcucgguacaUGGCGGGCuCGCUgAUGAUGg -3'
miRNA:   3'- -GUUCU---------------ACUGCCUGuGCGAgUACUGCg -5'
11504 3' -50.9 NC_003085.1 + 5597 0.7 0.697134
Target:  5'- --uGGUG-CGGACgAUGCUgaGUGACGCg -3'
miRNA:   3'- guuCUACuGCCUG-UGCGAg-UACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 17009 0.75 0.433543
Target:  5'- aCGAGAagcgcgGAUGGGCGCuGCUCGcguaUGACGCc -3'
miRNA:   3'- -GUUCUa-----CUGCCUGUG-CGAGU----ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 14873 0.74 0.474417
Target:  5'- gCAAGGUGACGGACGaGCagGUGuuCGCc -3'
miRNA:   3'- -GUUCUACUGCCUGUgCGagUACu-GCG- -5'
11504 3' -50.9 NC_003085.1 + 35615 0.74 0.506299
Target:  5'- gCGAGGUGGaaGACACGUUugacguugagcaCAUGACGCu -3'
miRNA:   3'- -GUUCUACUgcCUGUGCGA------------GUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 17758 0.72 0.580398
Target:  5'- gGAGAUGGCGcgagagauugcugaGGCcCGCUCAUGACa- -3'
miRNA:   3'- gUUCUACUGC--------------CUGuGCGAGUACUGcg -5'
11504 3' -50.9 NC_003085.1 + 25365 0.72 0.606437
Target:  5'- --cGGUGACGGGCACGC-CGacGGCGg -3'
miRNA:   3'- guuCUACUGCCUGUGCGaGUa-CUGCg -5'
11504 3' -50.9 NC_003085.1 + 594 0.72 0.622356
Target:  5'- gCAGGGUGucuCgacuggcgccguccuGGGCGCGCUCGaggcUGGCGCg -3'
miRNA:   3'- -GUUCUACu--G---------------CCUGUGCGAGU----ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 32136 0.71 0.674626
Target:  5'- -----cGACGGGgGCgGCUgGUGGCGCg -3'
miRNA:   3'- guucuaCUGCCUgUG-CGAgUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5930 0.71 0.674626
Target:  5'- aCGAGAccacgaaGACGGACACGCcgCGgcaGAUGCc -3'
miRNA:   3'- -GUUCUa------CUGCCUGUGCGa-GUa--CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.