miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 3' -50.9 NC_003085.1 + 500 0.66 0.918758
Target:  5'- gGAGAUGAa-GGCGCGCgggccggaCcgGAUGCg -3'
miRNA:   3'- gUUCUACUgcCUGUGCGa-------GuaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 594 0.72 0.622356
Target:  5'- gCAGGGUGucuCgacuggcgccguccuGGGCGCGCUCGaggcUGGCGCg -3'
miRNA:   3'- -GUUCUACu--G---------------CCUGUGCGAGU----ACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 2067 0.67 0.867529
Target:  5'- cCAAGGcccgGACGGugACGCgacgaGCGCa -3'
miRNA:   3'- -GUUCUa---CUGCCugUGCGaguacUGCG- -5'
11504 3' -50.9 NC_003085.1 + 2141 0.68 0.813411
Target:  5'- gAGGAcGGCGGccccCGC-CUCAUGACGUc -3'
miRNA:   3'- gUUCUaCUGCCu---GUGcGAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 2477 0.66 0.898506
Target:  5'- gGAGAaGuuGGGCgaaACGCUCAaGGCGUg -3'
miRNA:   3'- gUUCUaCugCCUG---UGCGAGUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 3696 0.66 0.891178
Target:  5'- uGGGAUG-CGGcCACGCagCGcGACGUg -3'
miRNA:   3'- gUUCUACuGCCuGUGCGa-GUaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 4385 0.66 0.905548
Target:  5'- uCGAGAguaGACGcguuccGGCACGCUg--GGCGCg -3'
miRNA:   3'- -GUUCUa--CUGC------CUGUGCGAguaCUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5242 0.66 0.894143
Target:  5'- -uGGAUGuggugguucgacgcuGCGGGCGCGCggCAguACGCg -3'
miRNA:   3'- guUCUAC---------------UGCCUGUGCGa-GUacUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5473 0.68 0.793631
Target:  5'- gCGGGAguuggaGGCGGACaACGCggCGUGGgGCc -3'
miRNA:   3'- -GUUCUa-----CUGCCUG-UGCGa-GUACUgCG- -5'
11504 3' -50.9 NC_003085.1 + 5597 0.7 0.697134
Target:  5'- --uGGUG-CGGACgAUGCUgaGUGACGCg -3'
miRNA:   3'- guuCUACuGCCUG-UGCGAg-UACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5664 1.13 0.001492
Target:  5'- aCAAGAUGACGGACACGCUCAUGACGCu -3'
miRNA:   3'- -GUUCUACUGCCUGUGCGAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 5930 0.71 0.674626
Target:  5'- aCGAGAccacgaaGACGGACACGCcgCGgcaGAUGCc -3'
miRNA:   3'- -GUUCUa------CUGCCUGUGCGa-GUa--CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 6144 0.66 0.898506
Target:  5'- -cGGA-GACGGACucacgAUGCUCGccgGACGUu -3'
miRNA:   3'- guUCUaCUGCCUG-----UGCGAGUa--CUGCG- -5'
11504 3' -50.9 NC_003085.1 + 7074 0.66 0.883568
Target:  5'- gAGGAgGACaaGGccCGCGCUCAUGcCGCc -3'
miRNA:   3'- gUUCUaCUG--CCu-GUGCGAGUACuGCG- -5'
11504 3' -50.9 NC_003085.1 + 7487 0.66 0.891178
Target:  5'- gGAGGUGACGGGCGucCGCgUCGagcgGuuGCa -3'
miRNA:   3'- gUUCUACUGCCUGU--GCG-AGUa---CugCG- -5'
11504 3' -50.9 NC_003085.1 + 7613 0.7 0.708294
Target:  5'- gCGAGGUGGaccagcgcCGGGCGgGaCUCAUGGgGCg -3'
miRNA:   3'- -GUUCUACU--------GCCUGUgC-GAGUACUgCG- -5'
11504 3' -50.9 NC_003085.1 + 8535 0.68 0.813411
Target:  5'- --cGAaGGCGGugACGC-CAUGACu- -3'
miRNA:   3'- guuCUaCUGCCugUGCGaGUACUGcg -5'
11504 3' -50.9 NC_003085.1 + 10020 0.7 0.685908
Target:  5'- -uGGGUGGCGGGCAa--UCAUGGUGCg -3'
miRNA:   3'- guUCUACUGCCUGUgcgAGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 11191 0.68 0.792623
Target:  5'- gCGAGAccuGCGGaaggaagGCACGC-CAUGACGUg -3'
miRNA:   3'- -GUUCUac-UGCC-------UGUGCGaGUACUGCG- -5'
11504 3' -50.9 NC_003085.1 + 11779 0.68 0.793631
Target:  5'- -----cGGCGGcgcCGCGCUCcgGGCGUg -3'
miRNA:   3'- guucuaCUGCCu--GUGCGAGuaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.