miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 5' -59.9 NC_003085.1 + 5699 1.09 0.000248
Target:  5'- gUUGAGUCCAAGCCCGCGCCCACCACCg -3'
miRNA:   3'- -AACUCAGGUUCGGGCGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 37441 0.87 0.012935
Target:  5'- -cGAGcgCCAAcCCCGCGCCCGCCACCg -3'
miRNA:   3'- aaCUCa-GGUUcGGGCGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 18981 0.8 0.045318
Target:  5'- -cGAGUCCAGGCgUCGCGUCCaggucGCCGCCu -3'
miRNA:   3'- aaCUCAGGUUCG-GGCGCGGG-----UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 20285 0.79 0.049985
Target:  5'- aUGAGgCgAAGCCCaaggccgugcccaacGCGCCCGCCACCu -3'
miRNA:   3'- aACUCaGgUUCGGG---------------CGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 36342 0.79 0.05234
Target:  5'- -aGuAGUCacaGAGCCCGCGCUCACgCACCu -3'
miRNA:   3'- aaC-UCAGg--UUCGGGCGCGGGUG-GUGG- -5'
11504 5' -59.9 NC_003085.1 + 930 0.78 0.065826
Target:  5'- -gGAGgacuggaAGGCCCGCGCCCucGCCGCCg -3'
miRNA:   3'- aaCUCagg----UUCGGGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 30392 0.77 0.071703
Target:  5'- ---cGUCCGGGCCCgGCGCCUgcuCCGCCg -3'
miRNA:   3'- aacuCAGGUUCGGG-CGCGGGu--GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 7076 0.75 0.109428
Target:  5'- -gGAGgacaAGGCCCGCGCUCauGCCGCCg -3'
miRNA:   3'- aaCUCagg-UUCGGGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 41844 0.74 0.125707
Target:  5'- aUGAGUCCc-GCCCgGCGCUgGuCCACCu -3'
miRNA:   3'- aACUCAGGuuCGGG-CGCGGgU-GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 34550 0.72 0.165159
Target:  5'- -cGAGcgCCAccagccGGCCCGCGUgCGCCGCa -3'
miRNA:   3'- aaCUCa-GGU------UCGGGCGCGgGUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 47081 0.71 0.188806
Target:  5'- -gGAGUaCCugcgaGAGCUCGCGCgCCGCgGCCu -3'
miRNA:   3'- aaCUCA-GG-----UUCGGGCGCG-GGUGgUGG- -5'
11504 5' -59.9 NC_003085.1 + 290 0.71 0.19388
Target:  5'- aUUGAGgugaccgCCGAGUCCcCGUCCGCUGCCc -3'
miRNA:   3'- -AACUCa------GGUUCGGGcGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 21894 0.71 0.204386
Target:  5'- -cGGGUCCGuGCCCugccagaugGCGacgucaCCGCCGCCg -3'
miRNA:   3'- aaCUCAGGUuCGGG---------CGCg-----GGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 43838 0.71 0.204386
Target:  5'- -cGAGcgcUCCAgcAGCCCGU--CCACCACCg -3'
miRNA:   3'- aaCUC---AGGU--UCGGGCGcgGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 43024 0.71 0.209822
Target:  5'- -cGGGUUCAAGuCCCGUacucCUCGCCACCc -3'
miRNA:   3'- aaCUCAGGUUC-GGGCGc---GGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 42121 0.71 0.209822
Target:  5'- -aGGGgcgcgUguAGCCCGCGUCCucaGCCGCCu -3'
miRNA:   3'- aaCUCa----GguUCGGGCGCGGG---UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 45349 0.7 0.215382
Target:  5'- -gGAGUCCcAGCgCgGCGCCCAacuCCAgCg -3'
miRNA:   3'- aaCUCAGGuUCG-GgCGCGGGU---GGUgG- -5'
11504 5' -59.9 NC_003085.1 + 6895 0.7 0.220493
Target:  5'- aUUGAGgCCAucgcgucAGCCCuCGCCCGCgCGCUg -3'
miRNA:   3'- -AACUCaGGU-------UCGGGcGCGGGUG-GUGG- -5'
11504 5' -59.9 NC_003085.1 + 22729 0.7 0.221067
Target:  5'- gUUGAGUgaCAgcaccGGCgCCGCGCCguCACCGCCc -3'
miRNA:   3'- -AACUCAg-GU-----UCG-GGCGCGG--GUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 41919 0.7 0.22688
Target:  5'- -cGGGcgUguAGCCCGUGCCCACgGCa -3'
miRNA:   3'- aaCUCa-GguUCGGGCGCGGGUGgUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.