miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 5' -59.9 NC_003085.1 + 290 0.71 0.19388
Target:  5'- aUUGAGgugaccgCCGAGUCCcCGUCCGCUGCCc -3'
miRNA:   3'- -AACUCa------GGUUCGGGcGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 651 0.67 0.380313
Target:  5'- -cGAGgcgCuCGAGCaCCGCccggacgucGCCgGCCACCu -3'
miRNA:   3'- aaCUCa--G-GUUCG-GGCG---------CGGgUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 722 0.67 0.371619
Target:  5'- --aGGUCCA--CCCGCGCCuCAgUCGCCu -3'
miRNA:   3'- aacUCAGGUucGGGCGCGG-GU-GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 927 0.67 0.353809
Target:  5'- -cGAGUCCugGAGCgucggCCGCGUCCgggugccagacagGCCGCUg -3'
miRNA:   3'- aaCUCAGG--UUCG-----GGCGCGGG-------------UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 930 0.78 0.065826
Target:  5'- -gGAGgacuggaAGGCCCGCGCCCucGCCGCCg -3'
miRNA:   3'- aaCUCagg----UUCGGGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 2292 0.68 0.298885
Target:  5'- -cGGGcUCCGgcagcacggcgcuGGCCUGC-CUCGCCACCg -3'
miRNA:   3'- aaCUC-AGGU-------------UCGGGCGcGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 4775 0.7 0.232823
Target:  5'- aUGAGgacUUgGAGCCUGCGUCCAgccCCACUg -3'
miRNA:   3'- aACUC---AGgUUCGGGCGCGGGU---GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 5212 0.68 0.299621
Target:  5'- -cGAGUCCGAGCgcgaCGCGgCCCggcaggaaGCgGCCu -3'
miRNA:   3'- aaCUCAGGUUCGg---GCGC-GGG--------UGgUGG- -5'
11504 5' -59.9 NC_003085.1 + 5699 1.09 0.000248
Target:  5'- gUUGAGUCCAAGCCCGCGCCCACCACCg -3'
miRNA:   3'- -AACUCAGGUUCGGGCGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 6743 0.7 0.22688
Target:  5'- aUG-GUCCGAcuGCCCG-GCCUGCCGCg -3'
miRNA:   3'- aACuCAGGUU--CGGGCgCGGGUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 6895 0.7 0.220493
Target:  5'- aUUGAGgCCAucgcgucAGCCCuCGCCCGCgCGCUg -3'
miRNA:   3'- -AACUCaGGU-------UCGGGcGCGGGUG-GUGG- -5'
11504 5' -59.9 NC_003085.1 + 7076 0.75 0.109428
Target:  5'- -gGAGgacaAGGCCCGCGCUCauGCCGCCg -3'
miRNA:   3'- aaCUCagg-UUCGGGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 9092 0.66 0.420141
Target:  5'- -aGAGgcgUC-AGCgCCGCgggcagcagcggcuuGCCCACCGCCc -3'
miRNA:   3'- aaCUCa--GGuUCG-GGCG---------------CGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 9178 0.66 0.415489
Target:  5'- cUGAGUCUguGGGUCgGCGCggguacuCCugCGCCc -3'
miRNA:   3'- aACUCAGG--UUCGGgCGCG-------GGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 9214 0.66 0.435237
Target:  5'- -cGGGaCgUAGGCCCcgGCggcgaagaGCCCGCCACCa -3'
miRNA:   3'- aaCUCaG-GUUCGGG--CG--------CGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 10088 0.67 0.363063
Target:  5'- aUGAGcCCccGCCgGCGUCggaACCGCCg -3'
miRNA:   3'- aACUCaGGuuCGGgCGCGGg--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 11252 0.67 0.354643
Target:  5'- -aGAGUgcaCGAGCcaCCGcCGCCCgaguuGCCGCCa -3'
miRNA:   3'- aaCUCAg--GUUCG--GGC-GCGGG-----UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 11454 0.67 0.380313
Target:  5'- gUUGGGgCCGAcGCggugugaGCGuCCCACCACCg -3'
miRNA:   3'- -AACUCaGGUU-CGgg-----CGC-GGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 12960 0.66 0.415489
Target:  5'- -cGcGUCCGgaaggcccggcagAGCuCCGUGCCCugGCUACCu -3'
miRNA:   3'- aaCuCAGGU-------------UCG-GGCGCGGG--UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 13042 0.66 0.3972
Target:  5'- gUGAGUCCcGGCuCCGUGCggagggugacuuuCCGucguCCACCc -3'
miRNA:   3'- aACUCAGGuUCG-GGCGCG-------------GGU----GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.