miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11504 5' -59.9 NC_003085.1 + 22860 0.68 0.32236
Target:  5'- -aGAGUCC-GGCa-GCGCCCACagguggUACCg -3'
miRNA:   3'- aaCUCAGGuUCGggCGCGGGUG------GUGG- -5'
11504 5' -59.9 NC_003085.1 + 45742 0.69 0.264517
Target:  5'- -cGGGUgCu-GCCUGCGUcgUCACCACCa -3'
miRNA:   3'- aaCUCAgGuuCGGGCGCG--GGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 45449 0.69 0.271261
Target:  5'- -cGAGUCgAAGCCCgggGCGCUCAuCCAg- -3'
miRNA:   3'- aaCUCAGgUUCGGG---CGCGGGU-GGUgg -5'
11504 5' -59.9 NC_003085.1 + 39949 0.69 0.271261
Target:  5'- -gGAG-CCGAuGaCCCGcCGCgCGCCGCCa -3'
miRNA:   3'- aaCUCaGGUU-C-GGGC-GCGgGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 26833 0.69 0.278142
Target:  5'- cUGcGcgCCAGGCgUGUGCCC-CCGCCa -3'
miRNA:   3'- aACuCa-GGUUCGgGCGCGGGuGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 2292 0.68 0.298885
Target:  5'- -cGGGcUCCGgcagcacggcgcuGGCCUGC-CUCGCCACCg -3'
miRNA:   3'- aaCUC-AGGU-------------UCGGGCGcGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 48960 0.68 0.299621
Target:  5'- --cGGUCC-GGCCCGCGCgCCuuCAUCu -3'
miRNA:   3'- aacUCAGGuUCGGGCGCG-GGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 17196 0.68 0.31464
Target:  5'- -cGAGUCCcgggccaccgAGGCCUGgGCgCugUACCa -3'
miRNA:   3'- aaCUCAGG----------UUCGGGCgCGgGugGUGG- -5'
11504 5' -59.9 NC_003085.1 + 16470 0.68 0.31464
Target:  5'- -aGuGUCCGA-CCUGCGCgCCGCCuucCCg -3'
miRNA:   3'- aaCuCAGGUUcGGGCGCG-GGUGGu--GG- -5'
11504 5' -59.9 NC_003085.1 + 21793 0.69 0.251437
Target:  5'- -cGAGUUCAccuucgacaaggAGUUgGCGCCCaagGCCGCCg -3'
miRNA:   3'- aaCUCAGGU------------UCGGgCGCGGG---UGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 49356 0.7 0.238895
Target:  5'- aUUGGG----GGCCCGcCGCCCGuCCGCCg -3'
miRNA:   3'- -AACUCagguUCGGGC-GCGGGU-GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 20121 0.7 0.238282
Target:  5'- -gGAGUCCGgccuagaGGCgCUGCGCagcuaCCGCUACCa -3'
miRNA:   3'- aaCUCAGGU-------UCG-GGCGCG-----GGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 20285 0.79 0.049985
Target:  5'- aUGAGgCgAAGCCCaaggccgugcccaacGCGCCCGCCACCu -3'
miRNA:   3'- aACUCaGgUUCGGG---------------CGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 41844 0.74 0.125707
Target:  5'- aUGAGUCCc-GCCCgGCGCUgGuCCACCu -3'
miRNA:   3'- aACUCAGGuuCGGG-CGCGGgU-GGUGG- -5'
11504 5' -59.9 NC_003085.1 + 34550 0.72 0.165159
Target:  5'- -cGAGcgCCAccagccGGCCCGCGUgCGCCGCa -3'
miRNA:   3'- aaCUCa-GGU------UCGGGCGCGgGUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 290 0.71 0.19388
Target:  5'- aUUGAGgugaccgCCGAGUCCcCGUCCGCUGCCc -3'
miRNA:   3'- -AACUCa------GGUUCGGGcGCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 41919 0.7 0.22688
Target:  5'- -cGGGcgUguAGCCCGUGCCCACgGCa -3'
miRNA:   3'- aaCUCa-GguUCGGGCGCGGGUGgUGg -5'
11504 5' -59.9 NC_003085.1 + 6743 0.7 0.22688
Target:  5'- aUG-GUCCGAcuGCCCG-GCCUGCCGCg -3'
miRNA:   3'- aACuCAGGUU--CGGGCgCGGGUGGUGg -5'
11504 5' -59.9 NC_003085.1 + 46760 0.7 0.232823
Target:  5'- -cGaAGUCCucGCCgGaGUCCACCACCu -3'
miRNA:   3'- aaC-UCAGGuuCGGgCgCGGGUGGUGG- -5'
11504 5' -59.9 NC_003085.1 + 4775 0.7 0.232823
Target:  5'- aUGAGgacUUgGAGCCUGCGUCCAgccCCACUg -3'
miRNA:   3'- aACUC---AGgUUCGGGCGCGGGU---GGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.