miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 49288 0.66 0.700027
Target:  5'- ---cUGUGGCuGCUGCGuCGCGuCgGCGUc -3'
miRNA:   3'- cuuaACGCUG-CGAUGC-GCGU-GgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 10459 0.66 0.696745
Target:  5'- ----cGCGGCGCuUugGCGCcccucggcuggccgACCugcuGCGCg -3'
miRNA:   3'- cuuaaCGCUGCG-AugCGCG--------------UGG----CGCG- -5'
11508 3' -54.8 NC_003085.1 + 4153 0.66 0.689065
Target:  5'- ----aGCGACuGCUG-GCGCAacuCCGCGa -3'
miRNA:   3'- cuuaaCGCUG-CGAUgCGCGU---GGCGCg -5'
11508 3' -54.8 NC_003085.1 + 48676 0.66 0.73246
Target:  5'- ----aGaCGACGaacaUGgGCGCACCguuGCGCg -3'
miRNA:   3'- cuuaaC-GCUGCg---AUgCGCGUGG---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 10241 0.66 0.73246
Target:  5'- ----gGUGGCGCaUugGCauCGCCGUGCc -3'
miRNA:   3'- cuuaaCGCUGCG-AugCGc-GUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3686 0.66 0.698934
Target:  5'- cGAGUUGCGuugggaugcggccACGCaGCGCGacguGCCaCGCg -3'
miRNA:   3'- -CUUAACGC-------------UGCGaUGCGCg---UGGcGCG- -5'
11508 3' -54.8 NC_003085.1 + 47312 0.66 0.706572
Target:  5'- ----gGCGACGUUGuccaccaucuccaGCGCGCCGCc- -3'
miRNA:   3'- cuuaaCGCUGCGAUg------------CGCGUGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 30655 0.66 0.710921
Target:  5'- ----gGCGAguCGCUGCggcaggGCGCuCUGCGCc -3'
miRNA:   3'- cuuaaCGCU--GCGAUG------CGCGuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 20135 0.66 0.73246
Target:  5'- ------aGGCGCUGCGCaGCuACCGCu- -3'
miRNA:   3'- cuuaacgCUGCGAUGCG-CG-UGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 34537 0.66 0.73246
Target:  5'- cGAGUUGgaGCGCcACGCGCuggcgGCCgguGCGCa -3'
miRNA:   3'- -CUUAACgcUGCGaUGCGCG-----UGG---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 38160 0.66 0.721736
Target:  5'- ----gGUGGCGCUcccCGC-CGCgGCGCa -3'
miRNA:   3'- cuuaaCGCUGCGAu--GCGcGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 15189 0.66 0.73246
Target:  5'- ----gGCuGAgcCGgUGCGCcaGCGCCGCGCc -3'
miRNA:   3'- cuuaaCG-CU--GCgAUGCG--CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 41543 0.66 0.710921
Target:  5'- ----aGUGACGuCUGCuGC-CGCCGCGg -3'
miRNA:   3'- cuuaaCGCUGC-GAUG-CGcGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 37296 0.66 0.710921
Target:  5'- ----aGCGACGC-ACcUGCGgUGCGCa -3'
miRNA:   3'- cuuaaCGCUGCGaUGcGCGUgGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3914 0.66 0.728182
Target:  5'- ---cUGCGACGCcuCGaacuggaagccgaGCGCCGCGg -3'
miRNA:   3'- cuuaACGCUGCGauGCg------------CGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 15481 0.66 0.700027
Target:  5'- ----cGCGGCGC-AgGgGUGCCGUGUg -3'
miRNA:   3'- cuuaaCGCUGCGaUgCgCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 45194 0.66 0.73246
Target:  5'- cGggUacUGCGACuacuugagGCcaaGCGCGCGaaGCGCu -3'
miRNA:   3'- -CuuA--ACGCUG--------CGa--UGCGCGUggCGCG- -5'
11508 3' -54.8 NC_003085.1 + 47708 0.66 0.678048
Target:  5'- cGAGUcGuCGACuGCUGCGCcugcugacggGCGCgGUGCg -3'
miRNA:   3'- -CUUAaC-GCUG-CGAUGCG----------CGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 29191 0.66 0.721736
Target:  5'- ----aGCGcCGCgaggACGCggaGCGCaCGCGCc -3'
miRNA:   3'- cuuaaCGCuGCGa---UGCG---CGUG-GCGCG- -5'
11508 3' -54.8 NC_003085.1 + 24925 0.66 0.73246
Target:  5'- ----cGCGcCGC-GCaCGCACCGCGa -3'
miRNA:   3'- cuuaaCGCuGCGaUGcGCGUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.