miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 11770 0.7 0.451361
Target:  5'- -----aCGACGgUACgGCgGCGCCGCGCu -3'
miRNA:   3'- cuuaacGCUGCgAUG-CG-CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 28485 0.72 0.341319
Target:  5'- ---cUGCG-UGCUgACGCGCAaCGCGCg -3'
miRNA:   3'- cuuaACGCuGCGA-UGCGCGUgGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 40646 0.72 0.349714
Target:  5'- ----cGCccuGACGCUG-GCuGCGCCGCGCa -3'
miRNA:   3'- cuuaaCG---CUGCGAUgCG-CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 26020 0.72 0.382038
Target:  5'- cGAAUUgGCGACGCUGCGCcagcaguugaaggaGCAgggcgaGCGCa -3'
miRNA:   3'- -CUUAA-CGCUGCGAUGCG--------------CGUgg----CGCG- -5'
11508 3' -54.8 NC_003085.1 + 5099 0.71 0.412498
Target:  5'- gGAGUUGgaGGCGUUucuCGCGuCGCCGCGg -3'
miRNA:   3'- -CUUAACg-CUGCGAu--GCGC-GUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 15116 0.71 0.422021
Target:  5'- ----aGCgGAUGgaGCGcCGCGCCGCGUg -3'
miRNA:   3'- cuuaaCG-CUGCgaUGC-GCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 23116 0.71 0.422021
Target:  5'- ----aGCGAgGCgGCGCaGCACCGCa- -3'
miRNA:   3'- cuuaaCGCUgCGaUGCG-CGUGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 8115 0.7 0.445403
Target:  5'- aAGUUG-GGCGCUgaugACGUgguggaccugcucaaGCGCCGCGCa -3'
miRNA:   3'- cUUAACgCUGCGA----UGCG---------------CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 33054 0.7 0.451361
Target:  5'- uGggUUGgGACGCUACcuuGCuGCAUCGC-Ca -3'
miRNA:   3'- -CuuAACgCUGCGAUG---CG-CGUGGCGcG- -5'
11508 3' -54.8 NC_003085.1 + 20514 0.72 0.341319
Target:  5'- ----cGCGACGa-GCGCGacuCCGCGCa -3'
miRNA:   3'- cuuaaCGCUGCgaUGCGCgu-GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 18961 0.72 0.341319
Target:  5'- ----cGCGACGgugGCGCGCuucCUGCGCa -3'
miRNA:   3'- cuuaaCGCUGCga-UGCGCGu--GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 10809 0.73 0.33307
Target:  5'- ---gUGCGA-GUggaaACGCGCACCGgGCa -3'
miRNA:   3'- cuuaACGCUgCGa---UGCGCGUGGCgCG- -5'
11508 3' -54.8 NC_003085.1 + 17239 0.8 0.120385
Target:  5'- ---cUGCGACu---CGCGCACCGCGCa -3'
miRNA:   3'- cuuaACGCUGcgauGCGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 24533 0.77 0.193102
Target:  5'- aAGUUGUGGuCGCggUGCGUGCGCgGCGCg -3'
miRNA:   3'- cUUAACGCU-GCG--AUGCGCGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 39044 0.76 0.198404
Target:  5'- ----gGCGAgCGCUGCGCGUACCuGCuGCu -3'
miRNA:   3'- cuuaaCGCU-GCGAUGCGCGUGG-CG-CG- -5'
11508 3' -54.8 NC_003085.1 + 14268 0.76 0.198404
Target:  5'- aGAcgUGCGGCcagGCUGCuGCcgucaaGCGCCGCGCa -3'
miRNA:   3'- -CUuaACGCUG---CGAUG-CG------CGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 22369 0.75 0.258664
Target:  5'- ----gGCGcCGCUACGUGUACCGCc- -3'
miRNA:   3'- cuuaaCGCuGCGAUGCGCGUGGCGcg -5'
11508 3' -54.8 NC_003085.1 + 8686 0.74 0.279453
Target:  5'- ----cGCGACGCgUGCGCGCACuuCGgGUg -3'
miRNA:   3'- cuuaaCGCUGCG-AUGCGCGUG--GCgCG- -5'
11508 3' -54.8 NC_003085.1 + 43204 0.74 0.286672
Target:  5'- ----cGCGGCGUccuCGUGCAgCGCGCg -3'
miRNA:   3'- cuuaaCGCUGCGau-GCGCGUgGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 28706 0.73 0.324969
Target:  5'- ----cGCGGaGCUGCGCGCuggccCUGCGCu -3'
miRNA:   3'- cuuaaCGCUgCGAUGCGCGu----GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.