miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11508 3' -54.8 NC_003085.1 + 596 0.67 0.65589
Target:  5'- ---gUGCGGCGaCUGCaaGC-CCGuCGCg -3'
miRNA:   3'- cuuaACGCUGC-GAUGcgCGuGGC-GCG- -5'
11508 3' -54.8 NC_003085.1 + 1078 0.76 0.198404
Target:  5'- ---aUGCGGCGCUGCu--CGCCGCGCu -3'
miRNA:   3'- cuuaACGCUGCGAUGcgcGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 1290 0.69 0.517416
Target:  5'- ---gUGCGcgccgaaauccucaaGCGUgaGCGCGaCGCCGCGCu -3'
miRNA:   3'- cuuaACGC---------------UGCGa-UGCGC-GUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 1578 0.85 0.055086
Target:  5'- cAGUUGCGGCGCggcgUACGCGUGCCGUGUg -3'
miRNA:   3'- cUUAACGCUGCG----AUGCGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 1723 1.11 0.000704
Target:  5'- cGAAUUGCGACGCUACGCGCACCGCGCc -3'
miRNA:   3'- -CUUAACGCUGCGAUGCGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 1903 0.67 0.65589
Target:  5'- ----aGCGggaaaACGUUcaGCGCGCUGCGCa -3'
miRNA:   3'- cuuaaCGC-----UGCGAugCGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 2075 0.7 0.461387
Target:  5'- cGGAcgGUGACGCgacgaGCGCAgCCGcCGCa -3'
miRNA:   3'- -CUUaaCGCUGCGaug--CGCGU-GGC-GCG- -5'
11508 3' -54.8 NC_003085.1 + 2501 0.66 0.700027
Target:  5'- ----gGCGugGCUGacggacggUGUGC-CCGCGUc -3'
miRNA:   3'- cuuaaCGCugCGAU--------GCGCGuGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 2605 0.68 0.567174
Target:  5'- ------aGACGCUGCGCGCGaagaagcggaGCGCu -3'
miRNA:   3'- cuuaacgCUGCGAUGCGCGUgg--------CGCG- -5'
11508 3' -54.8 NC_003085.1 + 2728 0.66 0.678048
Target:  5'- ----gGCGGCugGCaGCGCGCGCgaagGCGCu -3'
miRNA:   3'- cuuaaCGCUG--CGaUGCGCGUGg---CGCG- -5'
11508 3' -54.8 NC_003085.1 + 3067 0.69 0.513167
Target:  5'- ---cUGCGAUGUcacCGCGCACaGCGUg -3'
miRNA:   3'- cuuaACGCUGCGau-GCGCGUGgCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3402 0.75 0.258664
Target:  5'- ----cGCGACGCgUACgugaaaGCGUAUCGCGCg -3'
miRNA:   3'- cuuaaCGCUGCG-AUG------CGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3510 0.67 0.644772
Target:  5'- ----gGCGACGCUguacaagcucuACGCGgACC-CGUg -3'
miRNA:   3'- cuuaaCGCUGCGA-----------UGCGCgUGGcGCG- -5'
11508 3' -54.8 NC_003085.1 + 3611 0.66 0.689065
Target:  5'- ----gGCucCGCcuggACGUGCGCCGCGa -3'
miRNA:   3'- cuuaaCGcuGCGa---UGCGCGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 3686 0.66 0.698934
Target:  5'- cGAGUUGCGuugggaugcggccACGCaGCGCGacguGCCaCGCg -3'
miRNA:   3'- -CUUAACGC-------------UGCGaUGCGCg---UGGcGCG- -5'
11508 3' -54.8 NC_003085.1 + 3724 0.68 0.611388
Target:  5'- ---gUGaCGACGC-AgGCaGCAcCCGCGCa -3'
miRNA:   3'- cuuaAC-GCUGCGaUgCG-CGU-GGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3885 0.74 0.279453
Target:  5'- gGAGUUGCaGCGCauugagGC-CGCGCUGCGCg -3'
miRNA:   3'- -CUUAACGcUGCGa-----UGcGCGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 3914 0.66 0.728182
Target:  5'- ---cUGCGACGCcuCGaacuggaagccgaGCGCCGCGg -3'
miRNA:   3'- cuuaACGCUGCGauGCg------------CGUGGCGCg -5'
11508 3' -54.8 NC_003085.1 + 4023 0.69 0.545356
Target:  5'- aGAGUUG-GugGUgccgugacgACGC-CACCGCGCc -3'
miRNA:   3'- -CUUAACgCugCGa--------UGCGcGUGGCGCG- -5'
11508 3' -54.8 NC_003085.1 + 4112 0.67 0.65589
Target:  5'- gGAGUUG-GGCGCcGCGCugggacuccaGCGCCGCu- -3'
miRNA:   3'- -CUUAACgCUGCGaUGCG----------CGUGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.