Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11508 | 5' | -57 | NC_003085.1 | + | 49160 | 0.71 | 0.282329 |
Target: 5'- cGGGgGCAGCGGaCGGgGACUCgGCgGUCa -3' miRNA: 3'- -UCCgCGUCGUCaGCUgCUGAG-CG-UAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 48842 | 0.68 | 0.443815 |
Target: 5'- uGGCGCAGCacaacccgccguAGgccgCGACGgGCUUGCAgUCg -3' miRNA: 3'- uCCGCGUCG------------UCa---GCUGC-UGAGCGU-AG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 47369 | 0.7 | 0.36964 |
Target: 5'- uGGCGCcgAGguG-CGGCGGCugcgcucgUCGCGUCa -3' miRNA: 3'- uCCGCG--UCguCaGCUGCUG--------AGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 45773 | 0.66 | 0.590538 |
Target: 5'- cGGaCGCGGC-GUC-AgGACUCGCcgCg -3' miRNA: 3'- uCC-GCGUCGuCAGcUgCUGAGCGuaG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 42750 | 0.67 | 0.494196 |
Target: 5'- cGGGCGCGGUGGaCGGCauccaucGC-CGCGUCg -3' miRNA: 3'- -UCCGCGUCGUCaGCUGc------UGaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 40981 | 0.67 | 0.504589 |
Target: 5'- cGGGC-CAGCGccUCGGCGGCcuucuggCGCGUCa -3' miRNA: 3'- -UCCGcGUCGUc-AGCUGCUGa------GCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 38435 | 0.69 | 0.377552 |
Target: 5'- cGGGCcugucuCGGCGGUCGACGAguucuuccagcaaCUCGCGa- -3' miRNA: 3'- -UCCGc-----GUCGUCAGCUGCU-------------GAGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 34787 | 0.67 | 0.483903 |
Target: 5'- cAGGCGCAGUA--CGACGAg-CGguUCa -3' miRNA: 3'- -UCCGCGUCGUcaGCUGCUgaGCguAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 34313 | 0.66 | 0.54703 |
Target: 5'- aGGGgGCAGUAGUgCGucuCGuGCUCGUcgCa -3' miRNA: 3'- -UCCgCGUCGUCA-GCu--GC-UGAGCGuaG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 34190 | 0.68 | 0.453664 |
Target: 5'- cGGGCGCGGCGGgUGAgcuCGGC-CGCGg- -3' miRNA: 3'- -UCCGCGUCGUCaGCU---GCUGaGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 33221 | 0.67 | 0.536302 |
Target: 5'- cGGCGCAGCacgaGGaUGACGACgccaGCcgCg -3' miRNA: 3'- uCCGCGUCG----UCaGCUGCUGag--CGuaG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 31789 | 0.67 | 0.536302 |
Target: 5'- uGGGCGaAGCGGccCGGCcGCUCGCGa- -3' miRNA: 3'- -UCCGCgUCGUCa-GCUGcUGAGCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 29105 | 0.75 | 0.175773 |
Target: 5'- cGGCGuCAGCAG-CGGCGACgcggCGCGg- -3' miRNA: 3'- uCCGC-GUCGUCaGCUGCUGa---GCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 28875 | 0.68 | 0.473713 |
Target: 5'- cGGCGCugccgagcAGCAGUCGcagGCGuCUCagcagaGCAUCa -3' miRNA: 3'- uCCGCG--------UCGUCAGC---UGCuGAG------CGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 28240 | 0.66 | 0.579587 |
Target: 5'- uGGCgGCAGCGGUacuuggGACGGCUC-CAc- -3' miRNA: 3'- uCCG-CGUCGUCAg-----CUGCUGAGcGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 27972 | 0.67 | 0.503545 |
Target: 5'- gGGGCGggaaguuguacuuCGGCAccGUCGACGGa-CGCGUCu -3' miRNA: 3'- -UCCGC-------------GUCGU--CAGCUGCUgaGCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 26034 | 0.67 | 0.536302 |
Target: 5'- -uGCGcCAGCAGUUGAaggagcagGGCgagCGCAUCg -3' miRNA: 3'- ucCGC-GUCGUCAGCUg-------CUGa--GCGUAG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 24699 | 0.67 | 0.536302 |
Target: 5'- uGGUGCuggacGGCGGcaUCGGCGGCUuCGCGg- -3' miRNA: 3'- uCCGCG-----UCGUC--AGCUGCUGA-GCGUag -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 24200 | 0.66 | 0.579587 |
Target: 5'- cGGGCGC-GCcGaCGACGACgccCGCcgCg -3' miRNA: 3'- -UCCGCGuCGuCaGCUGCUGa--GCGuaG- -5' |
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11508 | 5' | -57 | NC_003085.1 | + | 23443 | 0.71 | 0.323005 |
Target: 5'- cAGGCGCAGCAGg-GACGcaugacggaggcccaGCgcaGCGUCg -3' miRNA: 3'- -UCCGCGUCGUCagCUGC---------------UGag-CGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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