miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11509 3' -54.7 NC_003085.1 + 14861 0.7 0.462129
Target:  5'- aUAGGCGCGCgCgcAAGGUGAcGGACGa -3'
miRNA:   3'- -GUUCGCGCGgGacUUCCACU-UCUGCg -5'
11509 3' -54.7 NC_003085.1 + 30507 0.7 0.466191
Target:  5'- gAAGCGCgccaccgucggcgggGCCCUGuAGGcGAuGGCGCu -3'
miRNA:   3'- gUUCGCG---------------CGGGACuUCCaCUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 41456 0.7 0.472317
Target:  5'- -uGGCGCGCaaggCUGGggcgcGGGUGAAGuacCGCg -3'
miRNA:   3'- guUCGCGCGg---GACU-----UCCACUUCu--GCG- -5'
11509 3' -54.7 NC_003085.1 + 25773 0.7 0.482617
Target:  5'- gCGGGCaaGUCCgacgUGcAGGUGggGACGCc -3'
miRNA:   3'- -GUUCGcgCGGG----ACuUCCACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 21141 0.7 0.482617
Target:  5'- aCAAGgGCGgCCgGAAGGUGGacuGGuACGUg -3'
miRNA:   3'- -GUUCgCGCgGGaCUUCCACU---UC-UGCG- -5'
11509 3' -54.7 NC_003085.1 + 30328 0.7 0.482617
Target:  5'- -cAGCGgGCCCUGgcGGacgcUGucgcGGGGCGCa -3'
miRNA:   3'- guUCGCgCGGGACuuCC----AC----UUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 24593 0.7 0.493024
Target:  5'- --uGgGCGCCgCUGcAGGUGAGGuuGCc -3'
miRNA:   3'- guuCgCGCGG-GACuUCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 18671 0.69 0.503532
Target:  5'- gCGAGCGCacuCCugCUGAGGGUGAcgccggucAGugGCc -3'
miRNA:   3'- -GUUCGCGc--GG--GACUUCCACU--------UCugCG- -5'
11509 3' -54.7 NC_003085.1 + 15075 0.69 0.514137
Target:  5'- gGAGUugGCCCUGGAGGaggGAcGGCGCc -3'
miRNA:   3'- gUUCGcgCGGGACUUCCa--CUuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 48768 0.69 0.524832
Target:  5'- uCAGGcCGCGCCC--GAGGcc-GGACGCg -3'
miRNA:   3'- -GUUC-GCGCGGGacUUCCacuUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 28121 0.69 0.53561
Target:  5'- -uGGCGCGCuCCaGcAGGGUGAu-GCGCg -3'
miRNA:   3'- guUCGCGCG-GGaC-UUCCACUucUGCG- -5'
11509 3' -54.7 NC_003085.1 + 38547 0.68 0.557389
Target:  5'- -cGGCaaGCCCuUGcuGGUGAGcGACGCg -3'
miRNA:   3'- guUCGcgCGGG-ACuuCCACUU-CUGCG- -5'
11509 3' -54.7 NC_003085.1 + 12803 0.68 0.568374
Target:  5'- gCAGGUGCuccacGCCCUGAcGGUccGGgcGGAUGCg -3'
miRNA:   3'- -GUUCGCG-----CGGGACUuCCA--CU--UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 30001 0.68 0.568374
Target:  5'- gGAGCG-GCCCUGGGcGGccuUGgcGACGUc -3'
miRNA:   3'- gUUCGCgCGGGACUU-CC---ACuuCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 40807 0.68 0.578307
Target:  5'- aCGGGCugaaaccGUGCUgCUGGcgguAGGUGAGGACGUa -3'
miRNA:   3'- -GUUCG-------CGCGG-GACU----UCCACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 42880 0.68 0.579413
Target:  5'- gGGGCGUGUC--GAGGGUGAGGccgagguccuGCGCg -3'
miRNA:   3'- gUUCGCGCGGgaCUUCCACUUC----------UGCG- -5'
11509 3' -54.7 NC_003085.1 + 42005 0.68 0.601617
Target:  5'- gAGGCGCgacGCCCaccGGGGcauguggaUGGAGACGCg -3'
miRNA:   3'- gUUCGCG---CGGGac-UUCC--------ACUUCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 22303 0.68 0.601617
Target:  5'- -cAGCGuCGCCCgucugguccccGAAGGUGAgcaccugcguGGGCGUc -3'
miRNA:   3'- guUCGC-GCGGGa----------CUUCCACU----------UCUGCG- -5'
11509 3' -54.7 NC_003085.1 + 21626 0.68 0.601617
Target:  5'- gGAGUGCGUuguCCUcuGGGUGGAGuuGCa -3'
miRNA:   3'- gUUCGCGCG---GGAcuUCCACUUCugCG- -5'
11509 3' -54.7 NC_003085.1 + 15958 0.68 0.601617
Target:  5'- -uGGCGCuCCCUuggccgcugGGAGGUGggG-CGUg -3'
miRNA:   3'- guUCGCGcGGGA---------CUUCCACuuCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.