Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11515 | 5' | -62.4 | NC_003085.1 | + | 49025 | 0.67 | 0.314761 |
Target: 5'- gUCCuUCACCG-CGaCCAGCgacucUUCGGCCa -3' miRNA: 3'- -GGGcAGUGGCaGC-GGUCG-----GAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 48902 | 0.73 | 0.124071 |
Target: 5'- gCCCGcCAgCCG-CGCC-GCCUCGcGCCGu -3' miRNA: 3'- -GGGCaGU-GGCaGCGGuCGGAGC-CGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 48100 | 0.69 | 0.2539 |
Target: 5'- gCCCGUCGCUGUCGUa---CUUGGCgGc -3' miRNA: 3'- -GGGCAGUGGCAGCGgucgGAGCCGgC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 46832 | 0.66 | 0.386023 |
Target: 5'- cCUCGcCGCCGaguugcgaCGCCagcgucugGGCCUUGGCCu -3' miRNA: 3'- -GGGCaGUGGCa-------GCGG--------UCGGAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 46684 | 0.66 | 0.361122 |
Target: 5'- gCCUGgagCGCCGcCGCU-GCCUgcuucCGGCCa -3' miRNA: 3'- -GGGCa--GUGGCaGCGGuCGGA-----GCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 45662 | 0.74 | 0.102942 |
Target: 5'- gCCCaG-CACCGUCGCC-GCUUCGGCg- -3' miRNA: 3'- -GGG-CaGUGGCAGCGGuCGGAGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 45028 | 0.75 | 0.092437 |
Target: 5'- gCUCGUCagggaugcucuGCCaGUCGCCAGCCUCcuccGCCGg -3' miRNA: 3'- -GGGCAG-----------UGG-CAGCGGUCGGAGc---CGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 42967 | 0.71 | 0.174258 |
Target: 5'- uCCCGcaUCAuCCGUgaCGCUGGCCacuucaUCGGCCGa -3' miRNA: 3'- -GGGC--AGU-GGCA--GCGGUCGG------AGCCGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 42851 | 0.75 | 0.097556 |
Target: 5'- uCCCGUCACCGagGCUcaAGCCgacgCGGCg- -3' miRNA: 3'- -GGGCAGUGGCagCGG--UCGGa---GCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 42532 | 0.66 | 0.361122 |
Target: 5'- -gCGUgGCCuccCGCUucGCCUCGGCCa -3' miRNA: 3'- ggGCAgUGGca-GCGGu-CGGAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 42269 | 0.68 | 0.273041 |
Target: 5'- cCCUGUCGCCcagCGCCucauGCCgaGGCUGg -3' miRNA: 3'- -GGGCAGUGGca-GCGGu---CGGagCCGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 42178 | 0.8 | 0.040603 |
Target: 5'- uCCCGUCGCa---GCCAGCCUCGGCa- -3' miRNA: 3'- -GGGCAGUGgcagCGGUCGGAGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 41651 | 0.67 | 0.307485 |
Target: 5'- gCCGcUCACCuggUGCUGuGCCUUGGCCa -3' miRNA: 3'- gGGC-AGUGGca-GCGGU-CGGAGCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 41288 | 0.71 | 0.174258 |
Target: 5'- -aCGUCACCGU-GCCAgagcaguccaacGCCUCGGgCGu -3' miRNA: 3'- ggGCAGUGGCAgCGGU------------CGGAGCCgGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 40902 | 0.69 | 0.2539 |
Target: 5'- gCCCGgcCGCCGUCagguacagGCCGGCCgggacgcgcgUGGCCu -3' miRNA: 3'- -GGGCa-GUGGCAG--------CGGUCGGa---------GCCGGc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 40798 | 0.67 | 0.299632 |
Target: 5'- cCCCGgCGCCcaaggccacgcgcGUCccgGCCGGCCUguaccugacggCGGCCGg -3' miRNA: 3'- -GGGCaGUGG-------------CAG---CGGUCGGA-----------GCCGGC- -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 37224 | 0.75 | 0.088527 |
Target: 5'- cCCCGUCaccgccagggugcccGCCGUCGCCGuGCC-CGGCg- -3' miRNA: 3'- -GGGCAG---------------UGGCAGCGGU-CGGaGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 36766 | 0.66 | 0.386023 |
Target: 5'- gCCGgccUCGCCGUCGgCGuacuCCUCGGCg- -3' miRNA: 3'- gGGC---AGUGGCAGCgGUc---GGAGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 34815 | 0.67 | 0.329699 |
Target: 5'- aCCCGUCACCuccgCGCgAuGCCaUCGGUa- -3' miRNA: 3'- -GGGCAGUGGca--GCGgU-CGG-AGCCGgc -5' |
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11515 | 5' | -62.4 | NC_003085.1 | + | 33931 | 0.66 | 0.386023 |
Target: 5'- --aGUCGCCGUgcaguugacuaCGUgGGCCggUGGCCGg -3' miRNA: 3'- gggCAGUGGCA-----------GCGgUCGGa-GCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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