Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 2603 | 1.05 | 0.000934 |
Target: 5'- gAAGACGCUGCGCGCGAAGAAGCGGAGc -3' miRNA: 3'- -UUCUGCGACGCGCGCUUCUUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 13930 | 0.8 | 0.070119 |
Target: 5'- cGGACGggGCGCGCgccgaaGAAGAAGCGGAGc -3' miRNA: 3'- uUCUGCgaCGCGCG------CUUCUUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 29184 | 0.78 | 0.105076 |
Target: 5'- cAGugGCaGCGcCGCGAGGAcGCGGAGc -3' miRNA: 3'- uUCugCGaCGC-GCGCUUCUuCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 10556 | 0.76 | 0.128194 |
Target: 5'- cGAGugGCagGCGCaagagGCGAAGGAGCGGGc -3' miRNA: 3'- -UUCugCGa-CGCG-----CGCUUCUUCGCCUc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 8829 | 0.75 | 0.164812 |
Target: 5'- cGAGACaugGCUGCGCGagcaGGAGggGCGGc- -3' miRNA: 3'- -UUCUG---CGACGCGCg---CUUCuuCGCCuc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 20155 | 0.71 | 0.280887 |
Target: 5'- cGGcACGUcacaGCGCGCGuGGAAGCGGAu -3' miRNA: 3'- uUC-UGCGa---CGCGCGCuUCUUCGCCUc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 30702 | 0.71 | 0.28813 |
Target: 5'- gGAGGCGaaGCgGCGCaagGggGAAGCGGAc -3' miRNA: 3'- -UUCUGCgaCG-CGCG---CuuCUUCGCCUc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 26028 | 0.71 | 0.310737 |
Target: 5'- -cGACGCUGCGCcaGCaguuGAAGGAGCaGGGc -3' miRNA: 3'- uuCUGCGACGCG--CG----CUUCUUCGcCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 43341 | 0.71 | 0.310737 |
Target: 5'- cGGACacacucCUGCGCGUGGAGuccgaGGGCGGGGa -3' miRNA: 3'- uUCUGc-----GACGCGCGCUUC-----UUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 10857 | 0.7 | 0.326545 |
Target: 5'- ---cCGCUGCGCG-GAAGAGGUGGc- -3' miRNA: 3'- uucuGCGACGCGCgCUUCUUCGCCuc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 48315 | 0.7 | 0.359921 |
Target: 5'- -cGGCGCcGCGCuGCuGGAGGAGuUGGAGg -3' miRNA: 3'- uuCUGCGaCGCG-CG-CUUCUUC-GCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 49316 | 0.69 | 0.372153 |
Target: 5'- aGAGACGgaGCGgGCaGuggaagaggcgccucGAGAAGUGGAGg -3' miRNA: 3'- -UUCUGCgaCGCgCG-C---------------UUCUUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 17145 | 0.69 | 0.377481 |
Target: 5'- -cGGCGuCUGCuacugGCGCGcuGAGGCGGAc -3' miRNA: 3'- uuCUGC-GACG-----CGCGCuuCUUCGCCUc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 19046 | 0.69 | 0.383761 |
Target: 5'- gAAGGCGUUGCuGCGC-AGGAagcgcgccaccgucGGCGGGGc -3' miRNA: 3'- -UUCUGCGACG-CGCGcUUCU--------------UCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 4158 | 0.69 | 0.403945 |
Target: 5'- -cGGCGagUGCGgGCGcuccaccAGGAGGCGGAGc -3' miRNA: 3'- uuCUGCg-ACGCgCGC-------UUCUUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 19040 | 0.69 | 0.413339 |
Target: 5'- ----gGCUGCGuCGUGGAGAuuccgcggcgcgcGGCGGAGc -3' miRNA: 3'- uucugCGACGC-GCGCUUCU-------------UCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 46395 | 0.68 | 0.430582 |
Target: 5'- --cACGCUGUGCGCGguGAcaucgcaguggucuGGCGGGc -3' miRNA: 3'- uucUGCGACGCGCGCuuCU--------------UCGCCUc -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 22582 | 0.68 | 0.432524 |
Target: 5'- cGGGCGUguggGcCGCgGCGGAGAaaaagcgGGCGGAGu -3' miRNA: 3'- uUCUGCGa---C-GCG-CGCUUCU-------UCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 25811 | 0.68 | 0.443295 |
Target: 5'- gGAGugGcCUGCcaucaccCGCGcGGAGGUGGAGa -3' miRNA: 3'- -UUCugC-GACGc------GCGCuUCUUCGCCUC- -5' |
|||||||
11517 | 5' | -56.8 | NC_003085.1 | + | 15616 | 0.67 | 0.473414 |
Target: 5'- --uGCGCUgauugaGCGgGUGggGAgGGCGGAGa -3' miRNA: 3'- uucUGCGA------CGCgCGCuuCU-UCGCCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home