miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11517 5' -56.8 NC_003085.1 + 2603 1.05 0.000934
Target:  5'- gAAGACGCUGCGCGCGAAGAAGCGGAGc -3'
miRNA:   3'- -UUCUGCGACGCGCGCUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 4158 0.69 0.403945
Target:  5'- -cGGCGagUGCGgGCGcuccaccAGGAGGCGGAGc -3'
miRNA:   3'- uuCUGCg-ACGCgCGC-------UUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 8829 0.75 0.164812
Target:  5'- cGAGACaugGCUGCGCGagcaGGAGggGCGGc- -3'
miRNA:   3'- -UUCUG---CGACGCGCg---CUUCuuCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 9603 0.66 0.591162
Target:  5'- gGGGuCGCUgGUGCuugGCGAAGuuGCGGAu -3'
miRNA:   3'- -UUCuGCGA-CGCG---CGCUUCuuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 10556 0.76 0.128194
Target:  5'- cGAGugGCagGCGCaagagGCGAAGGAGCGGGc -3'
miRNA:   3'- -UUCugCGa-CGCG-----CGCUUCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 10857 0.7 0.326545
Target:  5'- ---cCGCUGCGCG-GAAGAGGUGGc- -3'
miRNA:   3'- uucuGCGACGCGCgCUUCUUCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 11424 0.67 0.525751
Target:  5'- cGGugGCUGCuucuacggcccGUGC-AAGGAGUGGGGc -3'
miRNA:   3'- uUCugCGACG-----------CGCGcUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 12419 0.66 0.580123
Target:  5'- cGGGGcCGCUGCGCucCGAGGAGGCu--- -3'
miRNA:   3'- -UUCU-GCGACGCGc-GCUUCUUCGccuc -5'
11517 5' -56.8 NC_003085.1 + 13562 0.66 0.558186
Target:  5'- cGAGGCGagcaagGCGCGCGuGGAcGUGGGc -3'
miRNA:   3'- -UUCUGCga----CGCGCGCuUCUuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 13930 0.8 0.070119
Target:  5'- cGGACGggGCGCGCgccgaaGAAGAAGCGGAGc -3'
miRNA:   3'- uUCUGCgaCGCGCG------CUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 15616 0.67 0.473414
Target:  5'- --uGCGCUgauugaGCGgGUGggGAgGGCGGAGa -3'
miRNA:   3'- uucUGCGA------CGCgCGCuuCU-UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 17020 0.67 0.524682
Target:  5'- gAAGAUGCcuucccagGUGUGCGggGccuugcccuccacGGGCGGGGg -3'
miRNA:   3'- -UUCUGCGa-------CGCGCGCuuC-------------UUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 17145 0.69 0.377481
Target:  5'- -cGGCGuCUGCuacugGCGCGcuGAGGCGGAc -3'
miRNA:   3'- uuCUGC-GACG-----CGCGCuuCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 17666 0.67 0.519347
Target:  5'- gGAGGCGCUG-GCGCuGAGAccgacgacgcggccaGGCaGGAGc -3'
miRNA:   3'- -UUCUGCGACgCGCGcUUCU---------------UCG-CCUC- -5'
11517 5' -56.8 NC_003085.1 + 19040 0.69 0.413339
Target:  5'- ----gGCUGCGuCGUGGAGAuuccgcggcgcgcGGCGGAGc -3'
miRNA:   3'- uucugCGACGC-GCGCUUCU-------------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 19046 0.69 0.383761
Target:  5'- gAAGGCGUUGCuGCGC-AGGAagcgcgccaccgucGGCGGGGc -3'
miRNA:   3'- -UUCUGCGACG-CGCGcUUCU--------------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 20155 0.71 0.280887
Target:  5'- cGGcACGUcacaGCGCGCGuGGAAGCGGAu -3'
miRNA:   3'- uUC-UGCGa---CGCGCGCuUCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 20444 0.67 0.494054
Target:  5'- gGAGAugucCGCcGCGCGCGAgccgcuggAGAAGUGGc- -3'
miRNA:   3'- -UUCU----GCGaCGCGCGCU--------UCUUCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 22582 0.68 0.432524
Target:  5'- cGGGCGUguggGcCGCgGCGGAGAaaaagcgGGCGGAGu -3'
miRNA:   3'- uUCUGCGa---C-GCG-CGCUUCU-------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 23554 0.67 0.483681
Target:  5'- cAGGGCGCUGCucgGCGCGgcGuuGCgaugucgcuGGAGg -3'
miRNA:   3'- -UUCUGCGACG---CGCGCuuCuuCG---------CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.