miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11517 5' -56.8 NC_003085.1 + 13562 0.66 0.558186
Target:  5'- cGAGGCGagcaagGCGCGCGuGGAcGUGGGc -3'
miRNA:   3'- -UUCUGCga----CGCGCGCuUCUuCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 15616 0.67 0.473414
Target:  5'- --uGCGCUgauugaGCGgGUGggGAgGGCGGAGa -3'
miRNA:   3'- uucUGCGA------CGCgCGCuuCU-UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 23554 0.67 0.483681
Target:  5'- cAGGGCGCUGCucgGCGCGgcGuuGCgaugucgcuGGAGg -3'
miRNA:   3'- -UUCUGCGACG---CGCGCuuCuuCG---------CCUC- -5'
11517 5' -56.8 NC_003085.1 + 20444 0.67 0.494054
Target:  5'- gGAGAugucCGCcGCGCGCGAgccgcuggAGAAGUGGc- -3'
miRNA:   3'- -UUCU----GCGaCGCGCGCU--------UCUUCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 29396 0.67 0.504527
Target:  5'- gGAGuuGCUGCgccaGCGCGGccAGcccauGGCGGAGg -3'
miRNA:   3'- -UUCugCGACG----CGCGCU--UCu----UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 34933 0.67 0.504527
Target:  5'- cAGGCGCacGCG-GCGGAGuugcuggccGGCGGAGg -3'
miRNA:   3'- uUCUGCGa-CGCgCGCUUCu--------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 17666 0.67 0.519347
Target:  5'- gGAGGCGCUG-GCGCuGAGAccgacgacgcggccaGGCaGGAGc -3'
miRNA:   3'- -UUCUGCGACgCGCGcUUCU---------------UCG-CCUC- -5'
11517 5' -56.8 NC_003085.1 + 11424 0.67 0.525751
Target:  5'- cGGugGCUGCuucuacggcccGUGC-AAGGAGUGGGGc -3'
miRNA:   3'- uUCugCGACG-----------CGCGcUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 31001 0.66 0.53649
Target:  5'- gAAGACGCUcgacccaacaaGCGcCGUGAgGGAAGgGGAa -3'
miRNA:   3'- -UUCUGCGA-----------CGC-GCGCU-UCUUCgCCUc -5'
11517 5' -56.8 NC_003085.1 + 25811 0.68 0.443295
Target:  5'- gGAGugGcCUGCcaucaccCGCGcGGAGGUGGAGa -3'
miRNA:   3'- -UUCugC-GACGc------GCGCuUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 22582 0.68 0.432524
Target:  5'- cGGGCGUguggGcCGCgGCGGAGAaaaagcgGGCGGAGu -3'
miRNA:   3'- uUCUGCGa---C-GCG-CGCUUCU-------UCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 46395 0.68 0.430582
Target:  5'- --cACGCUGUGCGCGguGAcaucgcaguggucuGGCGGGc -3'
miRNA:   3'- uucUGCGACGCGCGCuuCU--------------UCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 13930 0.8 0.070119
Target:  5'- cGGACGggGCGCGCgccgaaGAAGAAGCGGAGc -3'
miRNA:   3'- uUCUGCgaCGCGCG------CUUCUUCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 29184 0.78 0.105076
Target:  5'- cAGugGCaGCGcCGCGAGGAcGCGGAGc -3'
miRNA:   3'- uUCugCGaCGC-GCGCUUCUuCGCCUC- -5'
11517 5' -56.8 NC_003085.1 + 10556 0.76 0.128194
Target:  5'- cGAGugGCagGCGCaagagGCGAAGGAGCGGGc -3'
miRNA:   3'- -UUCugCGa-CGCG-----CGCUUCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 8829 0.75 0.164812
Target:  5'- cGAGACaugGCUGCGCGagcaGGAGggGCGGc- -3'
miRNA:   3'- -UUCUG---CGACGCGCg---CUUCuuCGCCuc -5'
11517 5' -56.8 NC_003085.1 + 30702 0.71 0.28813
Target:  5'- gGAGGCGaaGCgGCGCaagGggGAAGCGGAc -3'
miRNA:   3'- -UUCUGCgaCG-CGCG---CuuCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 26028 0.71 0.310737
Target:  5'- -cGACGCUGCGCcaGCaguuGAAGGAGCaGGGc -3'
miRNA:   3'- uuCUGCGACGCG--CG----CUUCUUCGcCUC- -5'
11517 5' -56.8 NC_003085.1 + 17145 0.69 0.377481
Target:  5'- -cGGCGuCUGCuacugGCGCGcuGAGGCGGAc -3'
miRNA:   3'- uuCUGC-GACG-----CGCGCuuCUUCGCCUc -5'
11517 5' -56.8 NC_003085.1 + 19040 0.69 0.413339
Target:  5'- ----gGCUGCGuCGUGGAGAuuccgcggcgcgcGGCGGAGc -3'
miRNA:   3'- uucugCGACGC-GCGCUUCU-------------UCGCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.