miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11519 3' -63.1 NC_003085.1 + 31108 0.66 0.340836
Target:  5'- gCGGcgaGCGGCucaaccccgagcAGCGCGCCgaguucgugcguagCGCgGCCa -3'
miRNA:   3'- gGCC---CGCCGu-----------UCGCGCGGa-------------GCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 618 0.66 0.339273
Target:  5'- cCUGGGCGcGCucgaggcuGGCGCGgaCCUCGUcgagGCg -3'
miRNA:   3'- -GGCCCGC-CGu-------UCGCGC--GGAGCGa---CGg -5'
11519 3' -63.1 NC_003085.1 + 43035 0.66 0.339273
Target:  5'- aCCGGGcCGuGuCGAGCG-GCC-CGCUGg- -3'
miRNA:   3'- -GGCCC-GC-C-GUUCGCgCGGaGCGACgg -5'
11519 3' -63.1 NC_003085.1 + 40876 0.66 0.339273
Target:  5'- gCCGGGaCGcGCGuggccuuGgGCGCCggGgUGCCg -3'
miRNA:   3'- -GGCCC-GC-CGUu------CgCGCGGagCgACGG- -5'
11519 3' -63.1 NC_003085.1 + 10081 0.66 0.339273
Target:  5'- cUCGGGCGGCAAugugucGUGUGagUCgGCguagGCCg -3'
miRNA:   3'- -GGCCCGCCGUU------CGCGCggAG-CGa---CGG- -5'
11519 3' -63.1 NC_003085.1 + 46640 0.66 0.338493
Target:  5'- gCCGGGCaGaCGuguuGCcagugaugccgagGCGCUUCGCcGCCg -3'
miRNA:   3'- -GGCCCGcC-GUu---CG-------------CGCGGAGCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 3304 0.66 0.338493
Target:  5'- gUGGGcCGGCccagguAGCGCcggcaucGCCUUGCggcaucggGCCa -3'
miRNA:   3'- gGCCC-GCCGu-----UCGCG-------CGGAGCGa-------CGG- -5'
11519 3' -63.1 NC_003085.1 + 11606 0.66 0.331532
Target:  5'- -aGGGCGGCGcgaaggGGCuGUGCagggGCUGCUa -3'
miRNA:   3'- ggCCCGCCGU------UCG-CGCGgag-CGACGG- -5'
11519 3' -63.1 NC_003085.1 + 13898 0.66 0.331532
Target:  5'- cCUGGGCGGCGucuGCaCGUCaUgGC-GCCa -3'
miRNA:   3'- -GGCCCGCCGUu--CGcGCGG-AgCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 43195 0.66 0.331532
Target:  5'- gCGGuacuucGCGGCGuccucgugcAGCGCGCguacUUCGgaGCCa -3'
miRNA:   3'- gGCC------CGCCGU---------UCGCGCG----GAGCgaCGG- -5'
11519 3' -63.1 NC_003085.1 + 28106 0.66 0.329235
Target:  5'- uUGGGCaGC--GCGCGCCagaagcaggugcagUUGCUGCg -3'
miRNA:   3'- gGCCCGcCGuuCGCGCGG--------------AGCGACGg -5'
11519 3' -63.1 NC_003085.1 + 19141 0.66 0.324676
Target:  5'- uCCGGGCccGGCGccugcuccgccGCGCGCCgcggaaucuccacgaCGCaGCCa -3'
miRNA:   3'- -GGCCCG--CCGUu----------CGCGCGGa--------------GCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 26911 0.66 0.323921
Target:  5'- -aGGGUGGCGGGgGCacacGCCUgGC-GCg -3'
miRNA:   3'- ggCCCGCCGUUCgCG----CGGAgCGaCGg -5'
11519 3' -63.1 NC_003085.1 + 12086 0.66 0.323921
Target:  5'- ----cCGGCAGGUGCGCCagcgucaggcCGCUGCUg -3'
miRNA:   3'- ggcccGCCGUUCGCGCGGa---------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 23337 0.66 0.316442
Target:  5'- uCUGGcCGGcCAAGCGcCGCCg-GCcGCCg -3'
miRNA:   3'- -GGCCcGCC-GUUCGC-GCGGagCGaCGG- -5'
11519 3' -63.1 NC_003085.1 + 32141 0.66 0.316442
Target:  5'- -gGGGCGGCugguGGCGCGgUggguuacggCGUcgGCCa -3'
miRNA:   3'- ggCCCGCCGu---UCGCGCgGa--------GCGa-CGG- -5'
11519 3' -63.1 NC_003085.1 + 25358 0.66 0.316442
Target:  5'- gCCGGccgucGCGGUgagguagacGGGCGCGCCgacgacgaCGCccGCCg -3'
miRNA:   3'- -GGCC-----CGCCG---------UUCGCGCGGa-------GCGa-CGG- -5'
11519 3' -63.1 NC_003085.1 + 20819 0.66 0.315701
Target:  5'- gCCGGGCaGCAgccgguccuggagGGCguacuccaGCGCCugcuggaaggugUCGCUGUCc -3'
miRNA:   3'- -GGCCCGcCGU-------------UCG--------CGCGG------------AGCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 47546 0.66 0.309093
Target:  5'- cCCGcGaGCGauGCGcAGCGCGCUgaacguuuuccCGCUGCCu -3'
miRNA:   3'- -GGC-C-CGC--CGU-UCGCGCGGa----------GCGACGG- -5'
11519 3' -63.1 NC_003085.1 + 44336 0.66 0.309093
Target:  5'- cCUGGGCGGCGAcGCGgGagaggGCgGCCa -3'
miRNA:   3'- -GGCCCGCCGUU-CGCgCggag-CGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.