miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 41753 0.7 0.415539
Target:  5'- cUGCUcgGACGCC-CGGccagcCUGGAAGCCc -3'
miRNA:   3'- -ACGAcgCUGCGGaGCUu----GACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 32726 0.7 0.415539
Target:  5'- cGUaGCGcccauauuGCGCCUUGucCUGGAGGCUg -3'
miRNA:   3'- aCGaCGC--------UGCGGAGCuuGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 41887 0.7 0.425056
Target:  5'- cGCUuggGCGGCGCCgacaugcgCGAgccuguGCUGGggGgCg -3'
miRNA:   3'- aCGA---CGCUGCGGa-------GCU------UGACCuuCgG- -5'
11520 5' -55.8 NC_003085.1 + 12146 0.7 0.425056
Target:  5'- gGCUGUGGgaaguCGCUgCGAGuCUGGAguGGCCg -3'
miRNA:   3'- aCGACGCU-----GCGGaGCUU-GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 3763 0.7 0.434702
Target:  5'- cGCUGCGugGCCgcaucccaaCGcAACUcGAGGUCa -3'
miRNA:   3'- aCGACGCugCGGa--------GC-UUGAcCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 8575 0.7 0.434702
Target:  5'- cGCUGguGCGCgUCGuACUGGcGGGCCa -3'
miRNA:   3'- aCGACgcUGCGgAGCuUGACC-UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 10746 0.7 0.434702
Target:  5'- uUGCUGUccggccacacgGGCGCCggGAagacGCUGGggGCa -3'
miRNA:   3'- -ACGACG-----------CUGCGGagCU----UGACCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 20092 0.7 0.434702
Target:  5'- cGCUGUGACguGCCgcagguggCgGGGCUGGAguccGGCCu -3'
miRNA:   3'- aCGACGCUG--CGGa-------G-CUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 2719 0.69 0.444473
Target:  5'- ---cGUGACGCCaccaCGGcccaagcggguaGCUGGGAGCCa -3'
miRNA:   3'- acgaCGCUGCGGa---GCU------------UGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20657 0.69 0.444473
Target:  5'- gGCUcGCGuCGCgUCGGaguuGCUGGAgcGGCUg -3'
miRNA:   3'- aCGA-CGCuGCGgAGCU----UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 35463 0.69 0.451385
Target:  5'- gGCUGCGcagaGCC-CGAugugaacgaacucaACUGGAGGUCc -3'
miRNA:   3'- aCGACGCug--CGGaGCU--------------UGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 18002 0.69 0.454366
Target:  5'- aGCUGCGAgaGCg-CGGACUGGc-GCCc -3'
miRNA:   3'- aCGACGCUg-CGgaGCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 9122 0.69 0.454366
Target:  5'- uUGCUGUcGCGaCCUCu--CUGGGAGCg -3'
miRNA:   3'- -ACGACGcUGC-GGAGcuuGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 48220 0.69 0.464377
Target:  5'- aGC-GCGACGCCgc--GCUGGAggaggcAGCCc -3'
miRNA:   3'- aCGaCGCUGCGGagcuUGACCU------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 31971 0.69 0.464377
Target:  5'- gGCUgGCGAcugcccccguuaCGCCUgGGGCUGGcgcuGCCu -3'
miRNA:   3'- aCGA-CGCU------------GCGGAgCUUGACCuu--CGG- -5'
11520 5' -55.8 NC_003085.1 + 7465 0.69 0.464377
Target:  5'- gGUggGCGucGCGCCUCacGCUGGAGGUg -3'
miRNA:   3'- aCGa-CGC--UGCGGAGcuUGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 41088 0.69 0.464377
Target:  5'- cGCcaGCGACGCCcacggCGAugacgacgccGCUGGGccAGCCc -3'
miRNA:   3'- aCGa-CGCUGCGGa----GCU----------UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 45744 0.69 0.474503
Target:  5'- gGCUGacgGACGCCgaagcggCGAcgguGCUGGGccucacAGCCa -3'
miRNA:   3'- aCGACg--CUGCGGa------GCU----UGACCU------UCGG- -5'
11520 5' -55.8 NC_003085.1 + 18061 0.68 0.495076
Target:  5'- gUGgaGguaGACGCCUCGGACaagcggcagUGGGAGUUg -3'
miRNA:   3'- -ACgaCg--CUGCGGAGCUUG---------ACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 25828 0.68 0.495076
Target:  5'- uUGCccGCGAggaaUGCCUCGuACUGGcggcgauaGAGCCc -3'
miRNA:   3'- -ACGa-CGCU----GCGGAGCuUGACC--------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.