miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 3911 1.13 0.000415
Target:  5'- gUGCUGCGACGCCUCGAACUGGAAGCCg -3'
miRNA:   3'- -ACGACGCUGCGGAGCUUGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 22189 0.8 0.100263
Target:  5'- cUGCUGCGGCGCCgggCucuGCUGGGcGGCCu -3'
miRNA:   3'- -ACGACGCUGCGGa--Gcu-UGACCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 40869 0.75 0.190369
Target:  5'- cGC-GCGugGCCUUGGGCgccgGGguGCCg -3'
miRNA:   3'- aCGaCGCugCGGAGCUUGa---CCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 24964 0.75 0.200913
Target:  5'- gGCgaugagGCGGC-CCUgGAACUGGgcGCCg -3'
miRNA:   3'- aCGa-----CGCUGcGGAgCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 46843 0.75 0.200913
Target:  5'- aGUUGCGACGCCagCGu-CUGGGccuuGGCCu -3'
miRNA:   3'- aCGACGCUGCGGa-GCuuGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 5129 0.74 0.254796
Target:  5'- gGCgaagGCuACGCC-CGAAgaGGAGGCCg -3'
miRNA:   3'- aCGa---CGcUGCGGaGCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 23182 0.73 0.268276
Target:  5'- gUGCUGCGcCGCCUCGcuCaGGAcAGUCu -3'
miRNA:   3'- -ACGACGCuGCGGAGCuuGaCCU-UCGG- -5'
11520 5' -55.8 NC_003085.1 + 14966 0.73 0.27523
Target:  5'- cGCUGCGGCccaCCUcCGGgagGCUGGAcauGGCCu -3'
miRNA:   3'- aCGACGCUGc--GGA-GCU---UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 30662 0.73 0.27523
Target:  5'- cGCUGCGgcagggcgcucuGCGCCUCGcAUUGGcuGCUg -3'
miRNA:   3'- aCGACGC------------UGCGGAGCuUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 28627 0.72 0.296953
Target:  5'- cUGCUGCGGCcgGCCuuUCGAuaccccuucCUGGAGGCg -3'
miRNA:   3'- -ACGACGCUG--CGG--AGCUu--------GACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 27718 0.72 0.319985
Target:  5'- cGCUGUcGCGCCUCGuuGCUGGcgAGGUg -3'
miRNA:   3'- aCGACGcUGCGGAGCu-UGACC--UUCGg -5'
11520 5' -55.8 NC_003085.1 + 37318 0.72 0.336069
Target:  5'- gGuCUGCGACGCCUgccuugagcgCGGcgGCUGGGccGCCa -3'
miRNA:   3'- aC-GACGCUGCGGA----------GCU--UGACCUu-CGG- -5'
11520 5' -55.8 NC_003085.1 + 40487 0.71 0.34433
Target:  5'- cGCUGCuggcgGGCGUCgUCGAGCcGG-AGCCg -3'
miRNA:   3'- aCGACG-----CUGCGG-AGCUUGaCCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 20198 0.71 0.352735
Target:  5'- aGCUGCGcaGCGCCUCuaGGCcGGAcuccAGCCc -3'
miRNA:   3'- aCGACGC--UGCGGAGc-UUGaCCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 23550 0.71 0.361285
Target:  5'- cUGCUGaCGaAUGCCUCGAcGCUGcGcuGGGCCu -3'
miRNA:   3'- -ACGAC-GC-UGCGGAGCU-UGAC-C--UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3590 0.71 0.361285
Target:  5'- cGCUGcCGAgGCggCGAACUGGcAGCa -3'
miRNA:   3'- aCGAC-GCUgCGgaGCUUGACCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 14074 0.71 0.361285
Target:  5'- -uCUGCGAgCGCCUCGGACUccgccGGGAGa- -3'
miRNA:   3'- acGACGCU-GCGGAGCUUGA-----CCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 34951 0.71 0.369978
Target:  5'- uUGCUGgccggcggaGGCGCCUC--ACaGGAAGCCg -3'
miRNA:   3'- -ACGACg--------CUGCGGAGcuUGaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 49294 0.71 0.378813
Target:  5'- cUGCUGCGuCGCgUCG-GCgucccgGGAGGCg -3'
miRNA:   3'- -ACGACGCuGCGgAGCuUGa-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 28959 0.7 0.400587
Target:  5'- cUGCUGaGACGCCUgCGAcuGCUgcucggcagcgccgcGGAAGUCg -3'
miRNA:   3'- -ACGACgCUGCGGA-GCU--UGA---------------CCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.