miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 31971 0.69 0.464377
Target:  5'- gGCUgGCGAcugcccccguuaCGCCUgGGGCUGGcgcuGCCu -3'
miRNA:   3'- aCGA-CGCU------------GCGGAgCUUGACCuu--CGG- -5'
11520 5' -55.8 NC_003085.1 + 41753 0.7 0.415539
Target:  5'- cUGCUcgGACGCC-CGGccagcCUGGAAGCCc -3'
miRNA:   3'- -ACGAcgCUGCGGaGCUu----GACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 12146 0.7 0.425056
Target:  5'- gGCUGUGGgaaguCGCUgCGAGuCUGGAguGGCCg -3'
miRNA:   3'- aCGACGCU-----GCGGaGCUU-GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 10746 0.7 0.434702
Target:  5'- uUGCUGUccggccacacgGGCGCCggGAagacGCUGGggGCa -3'
miRNA:   3'- -ACGACG-----------CUGCGGagCU----UGACCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 20092 0.7 0.434702
Target:  5'- cGCUGUGACguGCCgcagguggCgGGGCUGGAguccGGCCu -3'
miRNA:   3'- aCGACGCUG--CGGa-------G-CUUGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 20657 0.69 0.444473
Target:  5'- gGCUcGCGuCGCgUCGGaguuGCUGGAgcGGCUg -3'
miRNA:   3'- aCGA-CGCuGCGgAGCU----UGACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 9122 0.69 0.454366
Target:  5'- uUGCUGUcGCGaCCUCu--CUGGGAGCg -3'
miRNA:   3'- -ACGACGcUGC-GGAGcuuGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 18002 0.69 0.454366
Target:  5'- aGCUGCGAgaGCg-CGGACUGGc-GCCc -3'
miRNA:   3'- aCGACGCUg-CGgaGCUUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 7465 0.69 0.464377
Target:  5'- gGUggGCGucGCGCCUCacGCUGGAGGUg -3'
miRNA:   3'- aCGa-CGC--UGCGGAGcuUGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 49294 0.71 0.378813
Target:  5'- cUGCUGCGuCGCgUCG-GCgucccgGGAGGCg -3'
miRNA:   3'- -ACGACGCuGCGgAGCuUGa-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 34951 0.71 0.369978
Target:  5'- uUGCUGgccggcggaGGCGCCUC--ACaGGAAGCCg -3'
miRNA:   3'- -ACGACg--------CUGCGGAGcuUGaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3590 0.71 0.361285
Target:  5'- cGCUGcCGAgGCggCGAACUGGcAGCa -3'
miRNA:   3'- aCGAC-GCUgCGgaGCUUGACCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 46843 0.75 0.200913
Target:  5'- aGUUGCGACGCCagCGu-CUGGGccuuGGCCu -3'
miRNA:   3'- aCGACGCUGCGGa-GCuuGACCU----UCGG- -5'
11520 5' -55.8 NC_003085.1 + 5129 0.74 0.254796
Target:  5'- gGCgaagGCuACGCC-CGAAgaGGAGGCCg -3'
miRNA:   3'- aCGa---CGcUGCGGaGCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 30662 0.73 0.27523
Target:  5'- cGCUGCGgcagggcgcucuGCGCCUCGcAUUGGcuGCUg -3'
miRNA:   3'- aCGACGC------------UGCGGAGCuUGACCuuCGG- -5'
11520 5' -55.8 NC_003085.1 + 14966 0.73 0.27523
Target:  5'- cGCUGCGGCccaCCUcCGGgagGCUGGAcauGGCCu -3'
miRNA:   3'- aCGACGCUGc--GGA-GCU---UGACCU---UCGG- -5'
11520 5' -55.8 NC_003085.1 + 28627 0.72 0.296953
Target:  5'- cUGCUGCGGCcgGCCuuUCGAuaccccuucCUGGAGGCg -3'
miRNA:   3'- -ACGACGCUG--CGG--AGCUu--------GACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 27718 0.72 0.319985
Target:  5'- cGCUGUcGCGCCUCGuuGCUGGcgAGGUg -3'
miRNA:   3'- aCGACGcUGCGGAGCu-UGACC--UUCGg -5'
11520 5' -55.8 NC_003085.1 + 40487 0.71 0.34433
Target:  5'- cGCUGCuggcgGGCGUCgUCGAGCcGG-AGCCg -3'
miRNA:   3'- aCGACG-----CUGCGG-AGCUUGaCCuUCGG- -5'
11520 5' -55.8 NC_003085.1 + 14074 0.71 0.361285
Target:  5'- -uCUGCGAgCGCCUCGGACUccgccGGGAGa- -3'
miRNA:   3'- acGACGCU-GCGGAGCUUGA-----CCUUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.