miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11520 5' -55.8 NC_003085.1 + 2719 0.69 0.444473
Target:  5'- ---cGUGACGCCaccaCGGcccaagcggguaGCUGGGAGCCa -3'
miRNA:   3'- acgaCGCUGCGGa---GCU------------UGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3220 0.66 0.647123
Target:  5'- cGCaagGCGAUGCCggCGcuacCUGGGccGGCCc -3'
miRNA:   3'- aCGa--CGCUGCGGa-GCuu--GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 3590 0.71 0.361285
Target:  5'- cGCUGcCGAgGCggCGAACUGGcAGCa -3'
miRNA:   3'- aCGAC-GCUgCGgaGCUUGACCuUCGg -5'
11520 5' -55.8 NC_003085.1 + 3763 0.7 0.434702
Target:  5'- cGCUGCGugGCCgcaucccaaCGcAACUcGAGGUCa -3'
miRNA:   3'- aCGACGCugCGGa--------GC-UUGAcCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 3911 1.13 0.000415
Target:  5'- gUGCUGCGACGCCUCGAACUGGAAGCCg -3'
miRNA:   3'- -ACGACGCUGCGGAGCUUGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 5129 0.74 0.254796
Target:  5'- gGCgaagGCuACGCC-CGAAgaGGAGGCCg -3'
miRNA:   3'- aCGa---CGcUGCGGaGCUUgaCCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 7385 0.66 0.658182
Target:  5'- gGCcGaCGGCGCCcgcgUGAACUGGcacGAGUCc -3'
miRNA:   3'- aCGaC-GCUGCGGa---GCUUGACC---UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 7465 0.69 0.464377
Target:  5'- gGUggGCGucGCGCCUCacGCUGGAGGUg -3'
miRNA:   3'- aCGa-CGC--UGCGGAGcuUGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 8575 0.7 0.434702
Target:  5'- cGCUGguGCGCgUCGuACUGGcGGGCCa -3'
miRNA:   3'- aCGACgcUGCGgAGCuUGACC-UUCGG- -5'
11520 5' -55.8 NC_003085.1 + 9122 0.69 0.454366
Target:  5'- uUGCUGUcGCGaCCUCu--CUGGGAGCg -3'
miRNA:   3'- -ACGACGcUGC-GGAGcuuGACCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 10491 0.66 0.658182
Target:  5'- cUGCUGCGcgGCGCaCUgGAGaauccgcGGAAGCg -3'
miRNA:   3'- -ACGACGC--UGCG-GAgCUUga-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 10746 0.7 0.434702
Target:  5'- uUGCUGUccggccacacgGGCGCCggGAagacGCUGGggGCa -3'
miRNA:   3'- -ACGACG-----------CUGCGGagCU----UGACCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 11307 0.66 0.647123
Target:  5'- cGC-GCuGGCGCUUguggacgaGGACUGGAAGUCc -3'
miRNA:   3'- aCGaCG-CUGCGGAg-------CUUGACCUUCGG- -5'
11520 5' -55.8 NC_003085.1 + 12146 0.7 0.425056
Target:  5'- gGCUGUGGgaaguCGCUgCGAGuCUGGAguGGCCg -3'
miRNA:   3'- aCGACGCU-----GCGGaGCUU-GACCU--UCGG- -5'
11520 5' -55.8 NC_003085.1 + 12189 0.68 0.501327
Target:  5'- gGUggGCGACGUCgagcgcuucccggCGAACUGGAAGg- -3'
miRNA:   3'- aCGa-CGCUGCGGa------------GCUUGACCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 13330 0.66 0.63605
Target:  5'- aGCUcgagaGCGACuGCCUgGGACUGacgggcGAGGCa -3'
miRNA:   3'- aCGA-----CGCUG-CGGAgCUUGAC------CUUCGg -5'
11520 5' -55.8 NC_003085.1 + 13915 0.66 0.624974
Target:  5'- gGCgUGCGcGCGUUUCGGACgGGgcGCg -3'
miRNA:   3'- aCG-ACGC-UGCGGAGCUUGaCCuuCGg -5'
11520 5' -55.8 NC_003085.1 + 14074 0.71 0.361285
Target:  5'- -uCUGCGAgCGCCUCGGACUccgccGGGAGa- -3'
miRNA:   3'- acGACGCU-GCGGAGCUUGA-----CCUUCgg -5'
11520 5' -55.8 NC_003085.1 + 14207 0.68 0.537363
Target:  5'- gGCUGCGACaaGCC-CGcGCgcaagcGGAAGCa -3'
miRNA:   3'- aCGACGCUG--CGGaGCuUGa-----CCUUCGg -5'
11520 5' -55.8 NC_003085.1 + 14966 0.73 0.27523
Target:  5'- cGCUGCGGCccaCCUcCGGgagGCUGGAcauGGCCu -3'
miRNA:   3'- aCGACGCUGc--GGA-GCU---UGACCU---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.