miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 5' -57 NC_003085.1 + 4147 1.1 0.000411
Target:  5'- cUACGGAGCGACUGCUGGCGCAACUCCg -3'
miRNA:   3'- -AUGCCUCGCUGACGACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 15268 0.78 0.095935
Target:  5'- cGCGGcGCGGC-GCUGGCGCAccgGCUCa -3'
miRNA:   3'- aUGCCuCGCUGaCGACCGCGU---UGAGg -5'
11522 5' -57 NC_003085.1 + 36966 0.75 0.168078
Target:  5'- cGCGGGGCca-UGUUGGCGCcgcuucGACUCCa -3'
miRNA:   3'- aUGCCUCGcugACGACCGCG------UUGAGG- -5'
11522 5' -57 NC_003085.1 + 39609 0.74 0.189453
Target:  5'- cGCGGAGCGcACcgaGCagguggccgcaggagUGGCGCAACUUCg -3'
miRNA:   3'- aUGCCUCGC-UGa--CG---------------ACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 48979 0.74 0.192547
Target:  5'- aACGGcgcgaGGCGGCgcgGCUGGCGgGccaauGCUCCg -3'
miRNA:   3'- aUGCC-----UCGCUGa--CGACCGCgU-----UGAGG- -5'
11522 5' -57 NC_003085.1 + 30351 0.74 0.1978
Target:  5'- cGCGGGGCGcACUGC-GGCGUcuAGCaUCCc -3'
miRNA:   3'- aUGCCUCGC-UGACGaCCGCG--UUG-AGG- -5'
11522 5' -57 NC_003085.1 + 27674 0.73 0.225976
Target:  5'- cUACGGcGGCGACgUGCUGGUGCugucgcgucugGGCgUCCg -3'
miRNA:   3'- -AUGCC-UCGCUG-ACGACCGCG-----------UUG-AGG- -5'
11522 5' -57 NC_003085.1 + 32137 0.72 0.250905
Target:  5'- gACgGGGGCGGCUGgUGGCGCggUg-- -3'
miRNA:   3'- aUG-CCUCGCUGACgACCGCGuuGagg -5'
11522 5' -57 NC_003085.1 + 799 0.72 0.257481
Target:  5'- aGCGGAgGCGACUGa-GGCGCGgguggaccuGCUCa -3'
miRNA:   3'- aUGCCU-CGCUGACgaCCGCGU---------UGAGg -5'
11522 5' -57 NC_003085.1 + 19177 0.72 0.264199
Target:  5'- uUGCGGAugacagcgaaGCGGgUGC-GGCGC-ACUCCg -3'
miRNA:   3'- -AUGCCU----------CGCUgACGaCCGCGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 12000 0.72 0.264199
Target:  5'- cUGCGGcagcAGCGGCcugacGCUGGCGCAcCUgCCg -3'
miRNA:   3'- -AUGCC----UCGCUGa----CGACCGCGUuGA-GG- -5'
11522 5' -57 NC_003085.1 + 13337 0.72 0.271057
Target:  5'- gUGCGGAGCGcugcCUGCUGGUaCuGCUCg -3'
miRNA:   3'- -AUGCCUCGCu---GACGACCGcGuUGAGg -5'
11522 5' -57 NC_003085.1 + 29475 0.71 0.278058
Target:  5'- cAUGG-GCuGGCcgcGCUGGCGCAgcaACUCCg -3'
miRNA:   3'- aUGCCuCG-CUGa--CGACCGCGU---UGAGG- -5'
11522 5' -57 NC_003085.1 + 19012 0.71 0.280898
Target:  5'- gGCGGGGCc-CUGUaggcgauggcgcucaUGGCGaCAACUCCa -3'
miRNA:   3'- aUGCCUCGcuGACG---------------ACCGC-GUUGAGG- -5'
11522 5' -57 NC_003085.1 + 9141 0.71 0.285202
Target:  5'- --gGGAGCGGCacCUGGCGgAGCUCg -3'
miRNA:   3'- augCCUCGCUGacGACCGCgUUGAGg -5'
11522 5' -57 NC_003085.1 + 34620 0.71 0.29249
Target:  5'- cGCGGGcCGGCUGgUGGCGCucGCggCCg -3'
miRNA:   3'- aUGCCUcGCUGACgACCGCGu-UGa-GG- -5'
11522 5' -57 NC_003085.1 + 14994 0.71 0.299923
Target:  5'- -uUGGAGCGccACgcGCUGGCggccggugcGCAACUCCu -3'
miRNA:   3'- auGCCUCGC--UGa-CGACCG---------CGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 7328 0.71 0.306737
Target:  5'- cGCGGAgGCGGCUgaggacgcggGCUacacgcgccccugGGCGCcGCUCCa -3'
miRNA:   3'- aUGCCU-CGCUGA----------CGA-------------CCGCGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 22200 0.71 0.315225
Target:  5'- uUugGGucCGGCUGCUgcGGCGCcgGGCUCUg -3'
miRNA:   3'- -AugCCucGCUGACGA--CCGCG--UUGAGG- -5'
11522 5' -57 NC_003085.1 + 2014 0.7 0.33111
Target:  5'- aGCGGAuGCGGCg--UGGCGCGAUguguUCCa -3'
miRNA:   3'- aUGCCU-CGCUGacgACCGCGUUG----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.