miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 5' -57 NC_003085.1 + 799 0.72 0.257481
Target:  5'- aGCGGAgGCGACUGa-GGCGCGgguggaccuGCUCa -3'
miRNA:   3'- aUGCCU-CGCUGACgaCCGCGU---------UGAGg -5'
11522 5' -57 NC_003085.1 + 2014 0.7 0.33111
Target:  5'- aGCGGAuGCGGCg--UGGCGCGAUguguUCCa -3'
miRNA:   3'- aUGCCU-CGCUGacgACCGCGUUG----AGG- -5'
11522 5' -57 NC_003085.1 + 4147 1.1 0.000411
Target:  5'- cUACGGAGCGACUGCUGGCGCAACUCCg -3'
miRNA:   3'- -AUGCCUCGCUGACGACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 6157 0.68 0.458068
Target:  5'- gACGGAG-GACUcccuggggccGCUGGUGCAucccggugggGCUCg -3'
miRNA:   3'- aUGCCUCgCUGA----------CGACCGCGU----------UGAGg -5'
11522 5' -57 NC_003085.1 + 6640 0.7 0.347575
Target:  5'- gACGuGAGCGcaaGgUGCUGGCGUcccAACUCg -3'
miRNA:   3'- aUGC-CUCGC---UgACGACCGCG---UUGAGg -5'
11522 5' -57 NC_003085.1 + 7328 0.71 0.306737
Target:  5'- cGCGGAgGCGGCUgaggacgcggGCUacacgcgccccugGGCGCcGCUCCa -3'
miRNA:   3'- aUGCCU-CGCUGA----------CGA-------------CCGCGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 7431 0.66 0.552014
Target:  5'- gUACuGGAGCGGC-GCccaggGGCGCGugUagcCCg -3'
miRNA:   3'- -AUG-CCUCGCUGaCGa----CCGCGUugA---GG- -5'
11522 5' -57 NC_003085.1 + 9141 0.71 0.285202
Target:  5'- --gGGAGCGGCacCUGGCGgAGCUCg -3'
miRNA:   3'- augCCUCGCUGacGACCGCgUUGAGg -5'
11522 5' -57 NC_003085.1 + 10828 0.69 0.38223
Target:  5'- -cCGGgcAGCGACUGCgggagugGGaUGCgAGCUCCg -3'
miRNA:   3'- auGCC--UCGCUGACGa------CC-GCG-UUGAGG- -5'
11522 5' -57 NC_003085.1 + 12000 0.72 0.264199
Target:  5'- cUGCGGcagcAGCGGCcugacGCUGGCGCAcCUgCCg -3'
miRNA:   3'- -AUGCC----UCGCUGa----CGACCGCGUuGA-GG- -5'
11522 5' -57 NC_003085.1 + 12090 0.66 0.552014
Target:  5'- cUACGGGGCGGgUGacgcGCGCAAgUCg -3'
miRNA:   3'- -AUGCCUCGCUgACgac-CGCGUUgAGg -5'
11522 5' -57 NC_003085.1 + 12830 0.66 0.552014
Target:  5'- gGCGGAuGCG-CUGUUGGcCGcCAAUgCCa -3'
miRNA:   3'- aUGCCU-CGCuGACGACC-GC-GUUGaGG- -5'
11522 5' -57 NC_003085.1 + 13337 0.72 0.271057
Target:  5'- gUGCGGAGCGcugcCUGCUGGUaCuGCUCg -3'
miRNA:   3'- -AUGCCUCGCu---GACGACCGcGuUGAGg -5'
11522 5' -57 NC_003085.1 + 14994 0.71 0.299923
Target:  5'- -uUGGAGCGccACgcGCUGGCggccggugcGCAACUCCu -3'
miRNA:   3'- auGCCUCGC--UGa-CGACCG---------CGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 15268 0.78 0.095935
Target:  5'- cGCGGcGCGGC-GCUGGCGCAccgGCUCa -3'
miRNA:   3'- aUGCCuCGCUGaCGACCGCGU---UGAGg -5'
11522 5' -57 NC_003085.1 + 15347 0.68 0.468108
Target:  5'- cGCGGGcGCGGCgggugaGCUcGGCcGCGGcCUCCg -3'
miRNA:   3'- aUGCCU-CGCUGa-----CGA-CCG-CGUU-GAGG- -5'
11522 5' -57 NC_003085.1 + 19012 0.71 0.280898
Target:  5'- gGCGGGGCc-CUGUaggcgauggcgcucaUGGCGaCAACUCCa -3'
miRNA:   3'- aUGCCUCGcuGACG---------------ACCGC-GUUGAGG- -5'
11522 5' -57 NC_003085.1 + 19177 0.72 0.264199
Target:  5'- uUGCGGAugacagcgaaGCGGgUGC-GGCGC-ACUCCg -3'
miRNA:   3'- -AUGCCU----------CGCUgACGaCCGCGuUGAGG- -5'
11522 5' -57 NC_003085.1 + 20506 0.68 0.428662
Target:  5'- aGCGGuaccGCGACga---GCGCGACUCCg -3'
miRNA:   3'- aUGCCu---CGCUGacgacCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 22022 0.69 0.409688
Target:  5'- aAUGGAGCGucucuggcCUGCgUGGCaGCAGCaCCa -3'
miRNA:   3'- aUGCCUCGCu-------GACG-ACCG-CGUUGaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.