miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11522 5' -57 NC_003085.1 + 22207 0.67 0.530519
Target:  5'- gUGCaGGGCGAcCUGCU-GCGCA--UCCa -3'
miRNA:   3'- -AUGcCUCGCU-GACGAcCGCGUugAGG- -5'
11522 5' -57 NC_003085.1 + 10828 0.69 0.38223
Target:  5'- -cCGGgcAGCGACUGCgggagugGGaUGCgAGCUCCg -3'
miRNA:   3'- auGCC--UCGCUGACGa------CC-GCG-UUGAGG- -5'
11522 5' -57 NC_003085.1 + 22022 0.69 0.409688
Target:  5'- aAUGGAGCGucucuggcCUGCgUGGCaGCAGCaCCa -3'
miRNA:   3'- aUGCCUCGCu-------GACG-ACCG-CGUUGaGG- -5'
11522 5' -57 NC_003085.1 + 20506 0.68 0.428662
Target:  5'- aGCGGuaccGCGACga---GCGCGACUCCg -3'
miRNA:   3'- aUGCCu---CGCUGacgacCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 48766 0.68 0.458068
Target:  5'- cGCGGAguugccccgugGCGACUgGC-GGCGCuuCUUCg -3'
miRNA:   3'- aUGCCU-----------CGCUGA-CGaCCGCGuuGAGG- -5'
11522 5' -57 NC_003085.1 + 42739 0.67 0.487488
Target:  5'- -uCGGGGCGA-UGCgGGCGCGguggacgGCaUCCa -3'
miRNA:   3'- auGCCUCGCUgACGaCCGCGU-------UG-AGG- -5'
11522 5' -57 NC_003085.1 + 27170 0.67 0.488518
Target:  5'- gACGG-GCGAC-GCUGGCuucgGCGuCUCUc -3'
miRNA:   3'- aUGCCuCGCUGaCGACCG----CGUuGAGG- -5'
11522 5' -57 NC_003085.1 + 45153 0.67 0.509337
Target:  5'- --aGGuGCaGC-GCUGGCGCuacguGCUCCu -3'
miRNA:   3'- augCCuCGcUGaCGACCGCGu----UGAGG- -5'
11522 5' -57 NC_003085.1 + 22890 0.67 0.519886
Target:  5'- --aGGAGC-----CUGGUGCGACUCCg -3'
miRNA:   3'- augCCUCGcugacGACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 29393 0.69 0.38223
Target:  5'- gGCGGAGUuGCUGCgccaGCGCGGCcagCCc -3'
miRNA:   3'- aUGCCUCGcUGACGac--CGCGUUGa--GG- -5'
11522 5' -57 NC_003085.1 + 6640 0.7 0.347575
Target:  5'- gACGuGAGCGcaaGgUGCUGGCGUcccAACUCg -3'
miRNA:   3'- aUGC-CUCGC---UgACGACCGCG---UUGAGg -5'
11522 5' -57 NC_003085.1 + 2014 0.7 0.33111
Target:  5'- aGCGGAuGCGGCg--UGGCGCGAUguguUCCa -3'
miRNA:   3'- aUGCCU-CGCUGacgACCGCGUUG----AGG- -5'
11522 5' -57 NC_003085.1 + 36966 0.75 0.168078
Target:  5'- cGCGGGGCca-UGUUGGCGCcgcuucGACUCCa -3'
miRNA:   3'- aUGCCUCGcugACGACCGCG------UUGAGG- -5'
11522 5' -57 NC_003085.1 + 39609 0.74 0.189453
Target:  5'- cGCGGAGCGcACcgaGCagguggccgcaggagUGGCGCAACUUCg -3'
miRNA:   3'- aUGCCUCGC-UGa--CG---------------ACCGCGUUGAGG- -5'
11522 5' -57 NC_003085.1 + 30351 0.74 0.1978
Target:  5'- cGCGGGGCGcACUGC-GGCGUcuAGCaUCCc -3'
miRNA:   3'- aUGCCUCGC-UGACGaCCGCG--UUG-AGG- -5'
11522 5' -57 NC_003085.1 + 27674 0.73 0.225976
Target:  5'- cUACGGcGGCGACgUGCUGGUGCugucgcgucugGGCgUCCg -3'
miRNA:   3'- -AUGCC-UCGCUG-ACGACCGCG-----------UUG-AGG- -5'
11522 5' -57 NC_003085.1 + 32137 0.72 0.250905
Target:  5'- gACgGGGGCGGCUGgUGGCGCggUg-- -3'
miRNA:   3'- aUG-CCUCGCUGACgACCGCGuuGagg -5'
11522 5' -57 NC_003085.1 + 12000 0.72 0.264199
Target:  5'- cUGCGGcagcAGCGGCcugacGCUGGCGCAcCUgCCg -3'
miRNA:   3'- -AUGCC----UCGCUGa----CGACCGCGUuGA-GG- -5'
11522 5' -57 NC_003085.1 + 9141 0.71 0.285202
Target:  5'- --gGGAGCGGCacCUGGCGgAGCUCg -3'
miRNA:   3'- augCCUCGCUGacGACCGCgUUGAGg -5'
11522 5' -57 NC_003085.1 + 7328 0.71 0.306737
Target:  5'- cGCGGAgGCGGCUgaggacgcggGCUacacgcgccccugGGCGCcGCUCCa -3'
miRNA:   3'- aUGCCU-CGCUGA----------CGA-------------CCGCGuUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.