miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11524 5' -54.3 NC_003085.1 + 2705 0.68 0.564959
Target:  5'- gGCCCaaGCGGGUaGCUgggagccAGCGC-UCCGCu -3'
miRNA:   3'- -CGGGagCGUUCA-CGA-------UCGUGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 4143 0.74 0.254209
Target:  5'- cGCUCUacggaGCGAcUGCUGGCGCAacUCCGCg -3'
miRNA:   3'- -CGGGAg----CGUUcACGAUCGUGU--AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 4171 0.71 0.409189
Target:  5'- cGCCCaacUCcagcgGCGAGUGCgGGCGC-UCCACc -3'
miRNA:   3'- -CGGG---AG-----CGUUCACGaUCGUGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 4944 0.69 0.500502
Target:  5'- cGUCCg-GCGGGUGCUgGGCACcaCCGCg -3'
miRNA:   3'- -CGGGagCGUUCACGA-UCGUGuaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 5009 1 0.004193
Target:  5'- aGCCCUCGCAAGUGUcAGCACAUCCACc -3'
miRNA:   3'- -CGGGAGCGUUCACGaUCGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 5612 0.69 0.540605
Target:  5'- gGCCCUuugcgcgcacuucgCGCAccAGUGCgAGCACGUgCCGa -3'
miRNA:   3'- -CGGGA--------------GCGU--UCACGaUCGUGUA-GGUg -5'
11524 5' -54.3 NC_003085.1 + 8215 0.66 0.723174
Target:  5'- cGCCUgaugCGC-GGcGCUugAGCAgGUCCACc -3'
miRNA:   3'- -CGGGa---GCGuUCaCGA--UCGUgUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 9080 0.67 0.621192
Target:  5'- gGCCC-CaGCAAGUGCggcuccaUGGCccuCGUCUACg -3'
miRNA:   3'- -CGGGaG-CGUUCACG-------AUCGu--GUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 9529 0.69 0.489886
Target:  5'- uGCCCggccucgagcUCGUccauGAGcGCcGGCACGUCCGCg -3'
miRNA:   3'- -CGGG----------AGCG----UUCaCGaUCGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 13668 0.66 0.694445
Target:  5'- uGCCUUgGCGucauggcgcgccuccGGUGCc--CACGUCCACg -3'
miRNA:   3'- -CGGGAgCGU---------------UCACGaucGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 13932 0.66 0.689982
Target:  5'- uGCCgggCGCGGGuUGCc-GCACAUCCGg -3'
miRNA:   3'- -CGGga-GCGUUC-ACGauCGUGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 14427 0.67 0.65626
Target:  5'- uGCUC-CGCGAGgGCUGGC-CcUCUACg -3'
miRNA:   3'- -CGGGaGCGUUCaCGAUCGuGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 17700 0.74 0.275063
Target:  5'- cGCCUgCGCAGGUGCUccGGCACG-CgACg -3'
miRNA:   3'- -CGGGaGCGUUCACGA--UCGUGUaGgUG- -5'
11524 5' -54.3 NC_003085.1 + 18654 0.69 0.543906
Target:  5'- uGCCCccgCGCAucuGUGCgAGCGCAcUCCuGCu -3'
miRNA:   3'- -CGGGa--GCGUu--CACGaUCGUGU-AGG-UG- -5'
11524 5' -54.3 NC_003085.1 + 19348 0.67 0.611016
Target:  5'- gGCCCg-GCAGGUGCcuaaGGC-CAUCCuCg -3'
miRNA:   3'- -CGGGagCGUUCACGa---UCGuGUAGGuG- -5'
11524 5' -54.3 NC_003085.1 + 20943 0.67 0.65626
Target:  5'- aGCCCcgCGCGcgucugcacgaGGUGCggUGGCugGccuUCCGCa -3'
miRNA:   3'- -CGGGa-GCGU-----------UCACG--AUCGugU---AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 21644 0.67 0.667539
Target:  5'- uGCCCgUCaccuGGUGC-AGgGCGUCCACg -3'
miRNA:   3'- -CGGG-AGcgu-UCACGaUCgUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 27911 0.67 0.644956
Target:  5'- gGCCCUCGCGGGccGCgcGUGguUCCGg -3'
miRNA:   3'- -CGGGAGCGUUCa-CGauCGUguAGGUg -5'
11524 5' -54.3 NC_003085.1 + 28786 0.66 0.678784
Target:  5'- aGCCgaagCGCAGG-GCcAGCGCGcagcUCCGCg -3'
miRNA:   3'- -CGGga--GCGUUCaCGaUCGUGU----AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 29296 0.72 0.372066
Target:  5'- uGCCCUCGCuGAGUcccugauucaGCaGGCGCGUgCGCu -3'
miRNA:   3'- -CGGGAGCG-UUCA----------CGaUCGUGUAgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.