miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11524 5' -54.3 NC_003085.1 + 40373 0.66 0.701121
Target:  5'- uGCCCgcggCGCugacgccucuGGcGCUGGCcgGCAUCCAa -3'
miRNA:   3'- -CGGGa---GCGu---------UCaCGAUCG--UGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 38086 0.68 0.599727
Target:  5'- gGCag-CGCAGGUGUccGGCGCcgCCACc -3'
miRNA:   3'- -CGggaGCGUUCACGa-UCGUGuaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 19348 0.67 0.611016
Target:  5'- gGCCCg-GCAGGUGCcuaaGGC-CAUCCuCg -3'
miRNA:   3'- -CGGGagCGUUCACGa---UCGuGUAGGuG- -5'
11524 5' -54.3 NC_003085.1 + 9080 0.67 0.621192
Target:  5'- gGCCC-CaGCAAGUGCggcuccaUGGCccuCGUCUACg -3'
miRNA:   3'- -CGGGaG-CGUUCACG-------AUCGu--GUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 38142 0.67 0.644956
Target:  5'- cGCCCUgcuggCGUuGGUGgUGGCGCuccccgCCGCg -3'
miRNA:   3'- -CGGGA-----GCGuUCACgAUCGUGua----GGUG- -5'
11524 5' -54.3 NC_003085.1 + 27911 0.67 0.644956
Target:  5'- gGCCCUCGCGGGccGCgcGUGguUCCGg -3'
miRNA:   3'- -CGGGAGCGUUCa-CGauCGUguAGGUg -5'
11524 5' -54.3 NC_003085.1 + 36230 0.67 0.65626
Target:  5'- -gCCUCGuCAGGUcGCUGGC-CAUUCGg -3'
miRNA:   3'- cgGGAGC-GUUCA-CGAUCGuGUAGGUg -5'
11524 5' -54.3 NC_003085.1 + 14427 0.67 0.65626
Target:  5'- uGCUC-CGCGAGgGCUGGC-CcUCUACg -3'
miRNA:   3'- -CGGGaGCGUUCaCGAUCGuGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 20943 0.67 0.65626
Target:  5'- aGCCCcgCGCGcgucugcacgaGGUGCggUGGCugGccuUCCGCa -3'
miRNA:   3'- -CGGGa-GCGU-----------UCACG--AUCGugU---AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 37873 0.68 0.566074
Target:  5'- gGCCagacgUCGgAGGUGCUGGUggGCA-CCACg -3'
miRNA:   3'- -CGGg----AGCgUUCACGAUCG--UGUaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 45733 0.69 0.543906
Target:  5'- aGUCCUgCGCGGGUGCUGccuGCGuCGUcaCCACc -3'
miRNA:   3'- -CGGGA-GCGUUCACGAU---CGU-GUA--GGUG- -5'
11524 5' -54.3 NC_003085.1 + 18654 0.69 0.543906
Target:  5'- uGCCCccgCGCAucuGUGCgAGCGCAcUCCuGCu -3'
miRNA:   3'- -CGGGa--GCGUu--CACGaUCGUGU-AGG-UG- -5'
11524 5' -54.3 NC_003085.1 + 44874 0.75 0.24104
Target:  5'- gGCCCUCGCAAccGCauccGCACGUCUGCu -3'
miRNA:   3'- -CGGGAGCGUUcaCGau--CGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 4143 0.74 0.254209
Target:  5'- cGCUCUacggaGCGAcUGCUGGCGCAacUCCGCg -3'
miRNA:   3'- -CGGGAg----CGUUcACGAUCGUGU--AGGUG- -5'
11524 5' -54.3 NC_003085.1 + 40311 0.73 0.312823
Target:  5'- cGCCCUCuaccucgccgGCAAGgGCUGGCGCGUgCCuCa -3'
miRNA:   3'- -CGGGAG----------CGUUCaCGAUCGUGUA-GGuG- -5'
11524 5' -54.3 NC_003085.1 + 38502 0.73 0.320831
Target:  5'- cGCCCUCGacCAGG-GCacgAGCGCAUUCAUg -3'
miRNA:   3'- -CGGGAGC--GUUCaCGa--UCGUGUAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 29686 0.73 0.328991
Target:  5'- -aCCUCGCGAcGUGggAGUACcUCCACg -3'
miRNA:   3'- cgGGAGCGUU-CACgaUCGUGuAGGUG- -5'
11524 5' -54.3 NC_003085.1 + 37105 0.72 0.345768
Target:  5'- cGCUCcaguUCaCGAGUGCUGGCACcgUCACg -3'
miRNA:   3'- -CGGG----AGcGUUCACGAUCGUGuaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 4944 0.69 0.500502
Target:  5'- cGUCCg-GCGGGUGCUgGGCACcaCCGCg -3'
miRNA:   3'- -CGGGagCGUUCACGA-UCGUGuaGGUG- -5'
11524 5' -54.3 NC_003085.1 + 34143 0.69 0.532928
Target:  5'- uGCaaUCGCGAGUGUcAGCcGCAUCgACa -3'
miRNA:   3'- -CGggAGCGUUCACGaUCG-UGUAGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.