Results 21 - 40 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 4944 | 0.69 | 0.500502 |
Target: 5'- cGUCCg-GCGGGUGCUgGGCACcaCCGCg -3' miRNA: 3'- -CGGGagCGUUCACGA-UCGUGuaGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 34143 | 0.69 | 0.532928 |
Target: 5'- uGCaaUCGCGAGUGUcAGCcGCAUCgACa -3' miRNA: 3'- -CGggAGCGUUCACGaUCG-UGUAGgUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 18654 | 0.69 | 0.543906 |
Target: 5'- uGCCCccgCGCAucuGUGCgAGCGCAcUCCuGCu -3' miRNA: 3'- -CGGGa--GCGUu--CACGaUCGUGU-AGG-UG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 30438 | 0.67 | 0.622324 |
Target: 5'- gGCCCggGCGGGaUGCUAG-ACG-CCGCa -3' miRNA: 3'- -CGGGagCGUUC-ACGAUCgUGUaGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 2705 | 0.68 | 0.564959 |
Target: 5'- gGCCCaaGCGGGUaGCUgggagccAGCGC-UCCGCu -3' miRNA: 3'- -CGGGagCGUUCA-CGA-------UCGUGuAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 5612 | 0.69 | 0.540605 |
Target: 5'- gGCCCUuugcgcgcacuucgCGCAccAGUGCgAGCACGUgCCGa -3' miRNA: 3'- -CGGGA--------------GCGU--UCACGaUCGUGUA-GGUg -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 39252 | 0.69 | 0.52203 |
Target: 5'- uGCCggCGUAAG-GC-AGCACAUCCGu -3' miRNA: 3'- -CGGgaGCGUUCaCGaUCGUGUAGGUg -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 9529 | 0.69 | 0.489886 |
Target: 5'- uGCCCggccucgagcUCGUccauGAGcGCcGGCACGUCCGCg -3' miRNA: 3'- -CGGG----------AGCG----UUCaCGaUCGUGUAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 4171 | 0.71 | 0.409189 |
Target: 5'- cGCCCaacUCcagcgGCGAGUGCgGGCGC-UCCACc -3' miRNA: 3'- -CGGG---AG-----CGUUCACGaUCGUGuAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 29296 | 0.72 | 0.372066 |
Target: 5'- uGCCCUCGCuGAGUcccugauucaGCaGGCGCGUgCGCu -3' miRNA: 3'- -CGGGAGCG-UUCA----------CGaUCGUGUAgGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 29399 | 0.67 | 0.622324 |
Target: 5'- uGCCC-CGCGgcGGUGCccuguccaaUAGCGCuggCCAUg -3' miRNA: 3'- -CGGGaGCGU--UCACG---------AUCGUGua-GGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 30362 | 0.67 | 0.633641 |
Target: 5'- cGUCCUCaaaacCGAGUGCggcauuCACGUCCGCc -3' miRNA: 3'- -CGGGAGc----GUUCACGauc---GUGUAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 21644 | 0.67 | 0.667539 |
Target: 5'- uGCCCgUCaccuGGUGC-AGgGCGUCCACg -3' miRNA: 3'- -CGGG-AGcgu-UCACGaUCgUGUAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 28786 | 0.66 | 0.678784 |
Target: 5'- aGCCgaagCGCAGG-GCcAGCGCGcagcUCCGCg -3' miRNA: 3'- -CGGga--GCGUUCaCGaUCGUGU----AGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 42623 | 0.66 | 0.689982 |
Target: 5'- aGCCCUCGCccgcGcGCUGGCcgaggcgaaGCGggaggCCACg -3' miRNA: 3'- -CGGGAGCGuu--CaCGAUCG---------UGUa----GGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 13932 | 0.66 | 0.689982 |
Target: 5'- uGCCgggCGCGGGuUGCc-GCACAUCCGg -3' miRNA: 3'- -CGGga-GCGUUC-ACGauCGUGUAGGUg -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 13668 | 0.66 | 0.694445 |
Target: 5'- uGCCUUgGCGucauggcgcgccuccGGUGCc--CACGUCCACg -3' miRNA: 3'- -CGGGAgCGU---------------UCACGaucGUGUAGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 38291 | 0.66 | 0.701121 |
Target: 5'- uGCCgUCGaGAGUGCacgAGCcACcgCCGCc -3' miRNA: 3'- -CGGgAGCgUUCACGa--UCG-UGuaGGUG- -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 42087 | 0.66 | 0.723174 |
Target: 5'- cGCCCUCGUccGUGCcgaCGCcgCCGg -3' miRNA: 3'- -CGGGAGCGuuCACGaucGUGuaGGUg -5' |
|||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 41043 | 0.75 | 0.247552 |
Target: 5'- uGCCgCUUGCGAGcGCUGGCGgGgCCACa -3' miRNA: 3'- -CGG-GAGCGUUCaCGAUCGUgUaGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home