Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 29399 | 0.67 | 0.622324 |
Target: 5'- uGCCC-CGCGgcGGUGCccuguccaaUAGCGCuggCCAUg -3' miRNA: 3'- -CGGGaGCGU--UCACG---------AUCGUGua-GGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 29686 | 0.73 | 0.328991 |
Target: 5'- -aCCUCGCGAcGUGggAGUACcUCCACg -3' miRNA: 3'- cgGGAGCGUU-CACgaUCGUGuAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 30362 | 0.67 | 0.633641 |
Target: 5'- cGUCCUCaaaacCGAGUGCggcauuCACGUCCGCc -3' miRNA: 3'- -CGGGAGc----GUUCACGauc---GUGUAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 30438 | 0.67 | 0.622324 |
Target: 5'- gGCCCggGCGGGaUGCUAG-ACG-CCGCa -3' miRNA: 3'- -CGGGagCGUUC-ACGAUCgUGUaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 32212 | 0.66 | 0.712189 |
Target: 5'- cGCCCUgCGCAAcaccGCccagAGCACGgggcgCCGCg -3' miRNA: 3'- -CGGGA-GCGUUca--CGa---UCGUGUa----GGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 34143 | 0.69 | 0.532928 |
Target: 5'- uGCaaUCGCGAGUGUcAGCcGCAUCgACa -3' miRNA: 3'- -CGggAGCGUUCACGaUCG-UGUAGgUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 36230 | 0.67 | 0.65626 |
Target: 5'- -gCCUCGuCAGGUcGCUGGC-CAUUCGg -3' miRNA: 3'- cgGGAGC-GUUCA-CGAUCGuGUAGGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 37105 | 0.72 | 0.345768 |
Target: 5'- cGCUCcaguUCaCGAGUGCUGGCACcgUCACg -3' miRNA: 3'- -CGGG----AGcGUUCACGAUCGUGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 37873 | 0.68 | 0.566074 |
Target: 5'- gGCCagacgUCGgAGGUGCUGGUggGCA-CCACg -3' miRNA: 3'- -CGGg----AGCgUUCACGAUCG--UGUaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38086 | 0.68 | 0.599727 |
Target: 5'- gGCag-CGCAGGUGUccGGCGCcgCCACc -3' miRNA: 3'- -CGggaGCGUUCACGa-UCGUGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38142 | 0.67 | 0.644956 |
Target: 5'- cGCCCUgcuggCGUuGGUGgUGGCGCuccccgCCGCg -3' miRNA: 3'- -CGGGA-----GCGuUCACgAUCGUGua----GGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38291 | 0.66 | 0.701121 |
Target: 5'- uGCCgUCGaGAGUGCacgAGCcACcgCCGCc -3' miRNA: 3'- -CGGgAGCgUUCACGa--UCG-UGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38502 | 0.73 | 0.320831 |
Target: 5'- cGCCCUCGacCAGG-GCacgAGCGCAUUCAUg -3' miRNA: 3'- -CGGGAGC--GUUCaCGa--UCGUGUAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 39252 | 0.69 | 0.52203 |
Target: 5'- uGCCggCGUAAG-GC-AGCACAUCCGu -3' miRNA: 3'- -CGGgaGCGUUCaCGaUCGUGUAGGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 40311 | 0.73 | 0.312823 |
Target: 5'- cGCCCUCuaccucgccgGCAAGgGCUGGCGCGUgCCuCa -3' miRNA: 3'- -CGGGAG----------CGUUCaCGAUCGUGUA-GGuG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 40373 | 0.66 | 0.701121 |
Target: 5'- uGCCCgcggCGCugacgccucuGGcGCUGGCcgGCAUCCAa -3' miRNA: 3'- -CGGGa---GCGu---------UCaCGAUCG--UGUAGGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 41043 | 0.75 | 0.247552 |
Target: 5'- uGCCgCUUGCGAGcGCUGGCGgGgCCACa -3' miRNA: 3'- -CGG-GAGCGUUCaCGAUCGUgUaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 42087 | 0.66 | 0.723174 |
Target: 5'- cGCCCUCGUccGUGCcgaCGCcgCCGg -3' miRNA: 3'- -CGGGAGCGuuCACGaucGUGuaGGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 42623 | 0.66 | 0.689982 |
Target: 5'- aGCCCUCGCccgcGcGCUGGCcgaggcgaaGCGggaggCCACg -3' miRNA: 3'- -CGGGAGCGuu--CaCGAUCG---------UGUa----GGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 43260 | 0.66 | 0.712189 |
Target: 5'- cGCCCUcggacuccacgCGCAGgaguguguccGUGCUgggcauggAGCACAggUCCACc -3' miRNA: 3'- -CGGGA-----------GCGUU----------CACGA--------UCGUGU--AGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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