Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11524 | 5' | -54.3 | NC_003085.1 | + | 19348 | 0.67 | 0.611016 |
Target: 5'- gGCCCg-GCAGGUGCcuaaGGC-CAUCCuCg -3' miRNA: 3'- -CGGGagCGUUCACGa---UCGuGUAGGuG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38086 | 0.68 | 0.599727 |
Target: 5'- gGCag-CGCAGGUGUccGGCGCcgCCACc -3' miRNA: 3'- -CGggaGCGUUCACGa-UCGUGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 37873 | 0.68 | 0.566074 |
Target: 5'- gGCCagacgUCGgAGGUGCUGGUggGCA-CCACg -3' miRNA: 3'- -CGGg----AGCgUUCACGAUCG--UGUaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 2705 | 0.68 | 0.564959 |
Target: 5'- gGCCCaaGCGGGUaGCUgggagccAGCGC-UCCGCu -3' miRNA: 3'- -CGGGagCGUUCA-CGA-------UCGUGuAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 18654 | 0.69 | 0.543906 |
Target: 5'- uGCCCccgCGCAucuGUGCgAGCGCAcUCCuGCu -3' miRNA: 3'- -CGGGa--GCGUu--CACGaUCGUGU-AGG-UG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 45733 | 0.69 | 0.543906 |
Target: 5'- aGUCCUgCGCGGGUGCUGccuGCGuCGUcaCCACc -3' miRNA: 3'- -CGGGA-GCGUUCACGAU---CGU-GUA--GGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 5612 | 0.69 | 0.540605 |
Target: 5'- gGCCCUuugcgcgcacuucgCGCAccAGUGCgAGCACGUgCCGa -3' miRNA: 3'- -CGGGA--------------GCGU--UCACGaUCGUGUA-GGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 34143 | 0.69 | 0.532928 |
Target: 5'- uGCaaUCGCGAGUGUcAGCcGCAUCgACa -3' miRNA: 3'- -CGggAGCGUUCACGaUCG-UGUAGgUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 39252 | 0.69 | 0.52203 |
Target: 5'- uGCCggCGUAAG-GC-AGCACAUCCGu -3' miRNA: 3'- -CGGgaGCGUUCaCGaUCGUGUAGGUg -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 4944 | 0.69 | 0.500502 |
Target: 5'- cGUCCg-GCGGGUGCUgGGCACcaCCGCg -3' miRNA: 3'- -CGGGagCGUUCACGA-UCGUGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 9529 | 0.69 | 0.489886 |
Target: 5'- uGCCCggccucgagcUCGUccauGAGcGCcGGCACGUCCGCg -3' miRNA: 3'- -CGGG----------AGCG----UUCaCGaUCGUGUAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 4171 | 0.71 | 0.409189 |
Target: 5'- cGCCCaacUCcagcgGCGAGUGCgGGCGC-UCCACc -3' miRNA: 3'- -CGGG---AG-----CGUUCACGaUCGUGuAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 29296 | 0.72 | 0.372066 |
Target: 5'- uGCCCUCGCuGAGUcccugauucaGCaGGCGCGUgCGCu -3' miRNA: 3'- -CGGGAGCG-UUCA----------CGaUCGUGUAgGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 44755 | 0.72 | 0.372066 |
Target: 5'- gGCUCUCG--GGUGCUGGCA--UCCGCc -3' miRNA: 3'- -CGGGAGCguUCACGAUCGUguAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 37105 | 0.72 | 0.345768 |
Target: 5'- cGCUCcaguUCaCGAGUGCUGGCACcgUCACg -3' miRNA: 3'- -CGGG----AGcGUUCACGAUCGUGuaGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 29686 | 0.73 | 0.328991 |
Target: 5'- -aCCUCGCGAcGUGggAGUACcUCCACg -3' miRNA: 3'- cgGGAGCGUU-CACgaUCGUGuAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 38502 | 0.73 | 0.320831 |
Target: 5'- cGCCCUCGacCAGG-GCacgAGCGCAUUCAUg -3' miRNA: 3'- -CGGGAGC--GUUCaCGa--UCGUGUAGGUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 40311 | 0.73 | 0.312823 |
Target: 5'- cGCCCUCuaccucgccgGCAAGgGCUGGCGCGUgCCuCa -3' miRNA: 3'- -CGGGAG----------CGUUCaCGAUCGUGUA-GGuG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 17700 | 0.74 | 0.275063 |
Target: 5'- cGCCUgCGCAGGUGCUccGGCACG-CgACg -3' miRNA: 3'- -CGGGaGCGUUCACGA--UCGUGUaGgUG- -5' |
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11524 | 5' | -54.3 | NC_003085.1 | + | 4143 | 0.74 | 0.254209 |
Target: 5'- cGCUCUacggaGCGAcUGCUGGCGCAacUCCGCg -3' miRNA: 3'- -CGGGAg----CGUUcACGAUCGUGU--AGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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