miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11530 5' -56.3 NC_003085.1 + 46846 0.66 0.63605
Target:  5'- uCGCg---GAGGCGGAGGUGGUGg--- -3'
miRNA:   3'- -GUGauugCUCCGCUUCCACCGCgcgu -5'
11530 5' -56.3 NC_003085.1 + 30329 0.66 0.63605
Target:  5'- -cCUGGgGcGGCGggGGcugGGCGcCGCGc -3'
miRNA:   3'- guGAUUgCuCCGCuuCCa--CCGC-GCGU- -5'
11530 5' -56.3 NC_003085.1 + 17432 0.66 0.60285
Target:  5'- uCGCUGGCGuuGCacuGAGGUGGCuCGCc -3'
miRNA:   3'- -GUGAUUGCucCGc--UUCCACCGcGCGu -5'
11530 5' -56.3 NC_003085.1 + 25332 0.66 0.60285
Target:  5'- cCACcGACaAGGUGGA--UGGCGCGCGc -3'
miRNA:   3'- -GUGaUUGcUCCGCUUccACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 12089 0.66 0.60285
Target:  5'- -uCU-ACGGGGCG--GGUGacGCGCGCAa -3'
miRNA:   3'- guGAuUGCUCCGCuuCCAC--CGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 16339 0.67 0.558976
Target:  5'- cCAgUAGCG-GGCGuccugGAGGcGGCgGCGCAg -3'
miRNA:   3'- -GUgAUUGCuCCGC-----UUCCaCCG-CGCGU- -5'
11530 5' -56.3 NC_003085.1 + 45877 0.67 0.548136
Target:  5'- gCACUGgugGCGAGGuUGGAGGcagggacGGCGCgGCGa -3'
miRNA:   3'- -GUGAU---UGCUCC-GCUUCCa------CCGCG-CGU- -5'
11530 5' -56.3 NC_003085.1 + 37066 0.67 0.548136
Target:  5'- gCGCcGACGAcGuGCGGaugcAGGUggacGGCGCGCAg -3'
miRNA:   3'- -GUGaUUGCU-C-CGCU----UCCA----CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 13557 0.67 0.548136
Target:  5'- aGCac-CGAGGCGAGcaaGGCGCGCGu -3'
miRNA:   3'- gUGauuGCUCCGCUUccaCCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 46915 0.67 0.548136
Target:  5'- uCACc-GCGgcAGGCGGcacAGGUucGGCGCGCGc -3'
miRNA:   3'- -GUGauUGC--UCCGCU---UCCA--CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 606 0.67 0.547055
Target:  5'- gACUGGCGccguccuGGGCGcgcucGAGGcUGGCGCGg- -3'
miRNA:   3'- gUGAUUGC-------UCCGC-----UUCC-ACCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 8981 0.68 0.516045
Target:  5'- gGCgu-CGAGGCGcaaggccuuGGUGGCgguGCGCAu -3'
miRNA:   3'- gUGauuGCUCCGCuu-------CCACCG---CGCGU- -5'
11530 5' -56.3 NC_003085.1 + 47729 0.68 0.495076
Target:  5'- uGCUGACG-GGCGc-GGUG-CGCGUAg -3'
miRNA:   3'- gUGAUUGCuCCGCuuCCACcGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 48987 0.68 0.484737
Target:  5'- gAUUGGCGAacGGCGcGAGGcGGCGCGg- -3'
miRNA:   3'- gUGAUUGCU--CCGC-UUCCaCCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 41031 0.68 0.471453
Target:  5'- gCGCUGGCGGGGCcacagggacgccugGGAGaGgcaccucucGGCGCGCGg -3'
miRNA:   3'- -GUGAUUGCUCCG--------------CUUC-Ca--------CCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 42751 0.68 0.465385
Target:  5'- aCACuUGACGAguaccgggcccgcacGGCGGugcaguggcuauggAGGUGGCGCGaCGa -3'
miRNA:   3'- -GUG-AUUGCU---------------CCGCU--------------UCCACCGCGC-GU- -5'
11530 5' -56.3 NC_003085.1 + 11592 0.69 0.454366
Target:  5'- gGCUGgaACGGGGC-AGGGcGGCGCGa- -3'
miRNA:   3'- gUGAU--UGCUCCGcUUCCaCCGCGCgu -5'
11530 5' -56.3 NC_003085.1 + 26920 0.69 0.425055
Target:  5'- -cCUGAauCGAggguGGCGggGGcacacgccUGGCGCGCAg -3'
miRNA:   3'- guGAUU--GCU----CCGCuuCC--------ACCGCGCGU- -5'
11530 5' -56.3 NC_003085.1 + 8523 0.69 0.415538
Target:  5'- aGCgGGCGcAGGCGAAGGcGGUGaCGCc -3'
miRNA:   3'- gUGaUUGC-UCCGCUUCCaCCGC-GCGu -5'
11530 5' -56.3 NC_003085.1 + 16552 0.7 0.396902
Target:  5'- ---cAGCGAcGG-GAAGGcGGCGCGCAg -3'
miRNA:   3'- gugaUUGCU-CCgCUUCCaCCGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.