Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11539 | 3' | -58.8 | NC_003085.1 | + | 40874 | 0.66 | 0.484121 |
Target: 5'- cGGGAcGCGCgugGCcuugggcgccgGGguGCCgUCCGCCa -3' miRNA: 3'- uCCCU-CGUGa--UG-----------UCguCGG-AGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 30043 | 0.66 | 0.484121 |
Target: 5'- cAGGGccAGCACaaguUGCAGCAGgC-CCagGCCGg -3' miRNA: 3'- -UCCC--UCGUG----AUGUCGUCgGaGG--UGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 30654 | 0.66 | 0.474007 |
Target: 5'- uGGcGAGuCGCUGCGGCAgggcgcucugcGCCUCgCAUUGg -3' miRNA: 3'- uCC-CUC-GUGAUGUCGU-----------CGGAG-GUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 6927 | 0.66 | 0.464001 |
Target: 5'- cGGGuAGUGCUGC-GCGGCUUUCGCg- -3' miRNA: 3'- uCCC-UCGUGAUGuCGUCGGAGGUGgc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 21169 | 0.66 | 0.464001 |
Target: 5'- cGuGGAGgGCUACAGC-GCCgUCCucgacacccaACCGg -3' miRNA: 3'- uC-CCUCgUGAUGUCGuCGG-AGG----------UGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 10426 | 0.66 | 0.464001 |
Target: 5'- gAGGGAGCGuCcGCGGU-GCCUCC-CgGg -3' miRNA: 3'- -UCCCUCGU-GaUGUCGuCGGAGGuGgC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 20116 | 0.66 | 0.464001 |
Target: 5'- cAGGaGGGCGCggGCGGCGGCaa-UGCCGu -3' miRNA: 3'- -UCC-CUCGUGa-UGUCGUCGgagGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 30759 | 0.66 | 0.463006 |
Target: 5'- cAGGGcauggcaGGCAgaGCAGCGcGaCCUCgACCGg -3' miRNA: 3'- -UCCC-------UCGUgaUGUCGU-C-GGAGgUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 1880 | 0.67 | 0.434666 |
Target: 5'- cAGGGGGCGCaccaguccCGGcCAGCCaacgggCCACCu -3' miRNA: 3'- -UCCCUCGUGau------GUC-GUCGGa-----GGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 31926 | 0.67 | 0.434666 |
Target: 5'- cGGGAGCA--GCAcccGguGCCUUCAUCa -3' miRNA: 3'- uCCCUCGUgaUGU---CguCGGAGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 1938 | 0.67 | 0.425128 |
Target: 5'- uGGcGGaAGCAgaacgGCAGCGGCUucgCCACCGa -3' miRNA: 3'- -UC-CC-UCGUga---UGUCGUCGGa--GGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 26032 | 0.67 | 0.414782 |
Target: 5'- gAGGGGGCAUUccccucgGCAcgcuucacGCAGuCCUUCGCCu -3' miRNA: 3'- -UCCCUCGUGA-------UGU--------CGUC-GGAGGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 24423 | 0.67 | 0.406434 |
Target: 5'- cGGuGGGCAcCUACGGCGGCaUCaACCGc -3' miRNA: 3'- uCC-CUCGU-GAUGUCGUCGgAGgUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 1458 | 0.68 | 0.376743 |
Target: 5'- aGGGGAGCGCaugACAccccaagucgccGCccgucaccgucgccAGCCUCgGCCGg -3' miRNA: 3'- -UCCCUCGUGa--UGU------------CG--------------UCGGAGgUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 48893 | 0.68 | 0.370636 |
Target: 5'- -cGGAGCAUUGCccgcCAGCCgcgCCGCCu -3' miRNA: 3'- ucCCUCGUGAUGuc--GUCGGa--GGUGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 19664 | 0.68 | 0.345237 |
Target: 5'- aAGGGcAGCAuCUACGGCGaCCUCCuggcgGCCc -3' miRNA: 3'- -UCCC-UCGU-GAUGUCGUcGGAGG-----UGGc -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 45034 | 0.68 | 0.337053 |
Target: 5'- cAGGGAuGCuCUGcCAGUcgccAGCCUCCuccGCCGg -3' miRNA: 3'- -UCCCU-CGuGAU-GUCG----UCGGAGG---UGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 20928 | 0.69 | 0.329011 |
Target: 5'- uGGGcGGCACcGCAGCGGCgagCUCggCGCCGg -3' miRNA: 3'- uCCC-UCGUGaUGUCGUCG---GAG--GUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 1527 | 0.69 | 0.329011 |
Target: 5'- uGGGGugucauGCGCUccccuucgucGgAGCAGCCUUCAUCGc -3' miRNA: 3'- -UCCCu-----CGUGA----------UgUCGUCGGAGGUGGC- -5' |
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11539 | 3' | -58.8 | NC_003085.1 | + | 11390 | 0.69 | 0.313355 |
Target: 5'- gGGuGGAGCGCUACcGcCGGCUgacgcaCCGCCGc -3' miRNA: 3'- -UC-CCUCGUGAUGuC-GUCGGa-----GGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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