miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11539 5' -63 NC_003085.1 + 23300 0.7 0.157058
Target:  5'- -aCGGCuauGGGGUGCCGCUggagaugcuugaCGCCGCu -3'
miRNA:   3'- gcGCCGucuCCCUACGGUGG------------GCGGCG- -5'
11539 5' -63 NC_003085.1 + 644 0.7 0.159966
Target:  5'- uGCGGCGGGGGccgcccugcacuucGAcgGCCAcCCCGCCcugGCu -3'
miRNA:   3'- gCGCCGUCUCC--------------CUa-CGGU-GGGCGG---CG- -5'
11539 5' -63 NC_003085.1 + 46997 0.7 0.169865
Target:  5'- gCGCGcGCcGAaccuGUGCCGCCUGCCGCg -3'
miRNA:   3'- -GCGC-CGuCUccc-UACGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 15269 0.7 0.174337
Target:  5'- cCGCGGCcGAGc----UCACCCGCCGCg -3'
miRNA:   3'- -GCGCCGuCUCccuacGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 40866 0.7 0.174338
Target:  5'- gCGUGGCcuuGGGcgccGGGGUGCCGUCCGCCa- -3'
miRNA:   3'- -GCGCCG---UCU----CCCUACGGUGGGCGGcg -5'
11539 5' -63 NC_003085.1 + 29020 0.7 0.178915
Target:  5'- -aCGGCccgcuGGGGGAUGCCuCCaaCGCCGUc -3'
miRNA:   3'- gcGCCGu----CUCCCUACGGuGG--GCGGCG- -5'
11539 5' -63 NC_003085.1 + 31025 0.7 0.178915
Target:  5'- uCGCuGGCAGGacucGGGucugcgGCUGCCUGUCGCa -3'
miRNA:   3'- -GCG-CCGUCU----CCCua----CGGUGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 38228 0.7 0.178915
Target:  5'- cCGCGGC--GGGGAgcGCCACCaccaaCGCCaGCa -3'
miRNA:   3'- -GCGCCGucUCCCUa-CGGUGG-----GCGG-CG- -5'
11539 5' -63 NC_003085.1 + 25448 0.7 0.183598
Target:  5'- aGCGGCGGccgguuucuGGGugGUCGgCCGCCGCu -3'
miRNA:   3'- gCGCCGUCu--------CCCuaCGGUgGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 15729 0.69 0.18839
Target:  5'- aCGCGGUGGAugGGGAUGaCCcgaaggaugCCGCUGCa -3'
miRNA:   3'- -GCGCCGUCU--CCCUAC-GGug-------GGCGGCG- -5'
11539 5' -63 NC_003085.1 + 19065 0.69 0.193291
Target:  5'- gCGCGGCGGAGcaGgcGCCggGCCCggacggagugcGCCGCa -3'
miRNA:   3'- -GCGCCGUCUCc-CuaCGG--UGGG-----------CGGCG- -5'
11539 5' -63 NC_003085.1 + 32820 0.69 0.20034
Target:  5'- aGCGGCugucgcgacugauuGGGGcccGAgagGCCGCgCGCCGCg -3'
miRNA:   3'- gCGCCGu-------------CUCC---CUa--CGGUGgGCGGCG- -5'
11539 5' -63 NC_003085.1 + 39930 0.69 0.203429
Target:  5'- cCGCGucguGCAcuaccAGGGA-GCCgaugACCCGCCGCg -3'
miRNA:   3'- -GCGC----CGUc----UCCCUaCGG----UGGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 28802 0.69 0.203429
Target:  5'- uGCGGCGcGAGGaGUGCCGCUgGCUc- -3'
miRNA:   3'- gCGCCGU-CUCCcUACGGUGGgCGGcg -5'
11539 5' -63 NC_003085.1 + 48647 0.69 0.20814
Target:  5'- gGUGGCGuccGAGGGGcaucccgUGCCaACCCGCuCGg -3'
miRNA:   3'- gCGCCGU---CUCCCU-------ACGG-UGGGCG-GCg -5'
11539 5' -63 NC_003085.1 + 43434 0.69 0.208669
Target:  5'- uCGCGucGUcguGAGGGGUGCCGCgCUGCUGa -3'
miRNA:   3'- -GCGC--CGu--CUCCCUACGGUG-GGCGGCg -5'
11539 5' -63 NC_003085.1 + 30443 0.69 0.20867
Target:  5'- cCGaUGGCccGGGcGGGAUGCUAgaCGCCGCa -3'
miRNA:   3'- -GC-GCCG--UCU-CCCUACGGUggGCGGCG- -5'
11539 5' -63 NC_003085.1 + 7539 0.69 0.213485
Target:  5'- gCGCgGGCcGAGGGGUGUgAcgucgacCuuGCCGCg -3'
miRNA:   3'- -GCG-CCGuCUCCCUACGgU-------GggCGGCG- -5'
11539 5' -63 NC_003085.1 + 4826 0.69 0.214026
Target:  5'- uGCauGCAGuGGGGUGUCAgUCUGCCGUg -3'
miRNA:   3'- gCGc-CGUCuCCCUACGGU-GGGCGGCG- -5'
11539 5' -63 NC_003085.1 + 40349 0.68 0.225092
Target:  5'- aGUgGGCGGuGGGcaagccgcUGCUGCCCGCgGCg -3'
miRNA:   3'- gCG-CCGUCuCCCu-------ACGGUGGGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.