Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11540 | 5' | -51.3 | NC_003085.1 | + | 49381 | 0.66 | 0.901798 |
Target: 5'- uGGGAGGuCGcCUcCCGGGaCGCCgACg -3' miRNA: 3'- -CCCUCUuGCaGAuGGUUUaGCGGgUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 1770 | 0.66 | 0.901798 |
Target: 5'- gGGGAGAcgGCGUUggagugggaCAGGUgGCCCGu -3' miRNA: 3'- -CCCUCU--UGCAGaug------GUUUAgCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 48612 | 0.66 | 0.901798 |
Target: 5'- cGGGAGAGgaGg--ACUGGAagGCCCGCg -3' miRNA: 3'- -CCCUCUUg-CagaUGGUUUagCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 5624 | 0.66 | 0.894618 |
Target: 5'- uGGuGGACGggCUGCUGGAgCGCUCGCc -3' miRNA: 3'- cCCuCUUGCa-GAUGGUUUaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 37234 | 0.66 | 0.894618 |
Target: 5'- aGGAGcuCGUCcccgucaccGCCAGggUGCCCGCc -3' miRNA: 3'- cCCUCuuGCAGa--------UGGUUuaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 15222 | 0.66 | 0.894618 |
Target: 5'- aGGGGGcaguaguGCGUCUcguGCUc-GUCGCaCCACg -3' miRNA: 3'- -CCCUCu------UGCAGA---UGGuuUAGCG-GGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 3412 | 0.66 | 0.893148 |
Target: 5'- cGGGGAGCGUCgucugugcggcgACCAg--CGCCUg- -3' miRNA: 3'- cCCUCUUGCAGa-----------UGGUuuaGCGGGug -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 28665 | 0.66 | 0.887155 |
Target: 5'- gGGGaAGGGCGUcCUACUGGgcaucAUC-CCCGCg -3' miRNA: 3'- -CCC-UCUUGCA-GAUGGUU-----UAGcGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 23959 | 0.66 | 0.887155 |
Target: 5'- -cGuGGACGgcugCUGCCGu-UCGCUCACg -3' miRNA: 3'- ccCuCUUGCa---GAUGGUuuAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 14867 | 0.66 | 0.879415 |
Target: 5'- cGGAGGAUGUCgGCCuu-UUGCaccCCGCg -3' miRNA: 3'- cCCUCUUGCAGaUGGuuuAGCG---GGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 26499 | 0.66 | 0.871404 |
Target: 5'- cGGAGucUGUg-GCCGAcAUCGCCUACg -3' miRNA: 3'- cCCUCuuGCAgaUGGUU-UAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 41498 | 0.66 | 0.871404 |
Target: 5'- cGGAGAGCGUaugGCUGuugcCGCCCGa -3' miRNA: 3'- cCCUCUUGCAga-UGGUuua-GCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 41095 | 0.66 | 0.871404 |
Target: 5'- aGGAGGAC----GCCAGcgaCGCCCACg -3' miRNA: 3'- cCCUCUUGcagaUGGUUua-GCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 42638 | 0.67 | 0.863129 |
Target: 5'- -uGAGGccaucGCGUCaGCCc--UCGCCCGCg -3' miRNA: 3'- ccCUCU-----UGCAGaUGGuuuAGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 39995 | 0.67 | 0.863129 |
Target: 5'- cGGAGAacgacccaGCGUCgACCAcg--GCCCGCu -3' miRNA: 3'- cCCUCU--------UGCAGaUGGUuuagCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 22288 | 0.67 | 0.85804 |
Target: 5'- cGGGAGGcCGcacagaagaaccucaUCaGCCAGGcUGCCCGCg -3' miRNA: 3'- -CCCUCUuGC---------------AGaUGGUUUaGCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 14374 | 0.67 | 0.854597 |
Target: 5'- cGGGGuGACGUCg--CAGAUgGCCCGg -3' miRNA: 3'- -CCCUcUUGCAGaugGUUUAgCGGGUg -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 15250 | 0.67 | 0.843136 |
Target: 5'- uGGGAGGACGacccggaggccgcgGCCGAGcucacccgccgCGCCCGCg -3' miRNA: 3'- -CCCUCUUGCaga-----------UGGUUUa----------GCGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 31408 | 0.67 | 0.836797 |
Target: 5'- cGGGAcggccggccugGGACGUCUGCUGAggcuucgguGUCgggcgcgccuGCCCGCg -3' miRNA: 3'- -CCCU-----------CUUGCAGAUGGUU---------UAG----------CGGGUG- -5' |
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11540 | 5' | -51.3 | NC_003085.1 | + | 33054 | 0.68 | 0.802506 |
Target: 5'- uGGGuuGGGACG-CUACCuugcugcaucgccagGAcgUGCCCGCg -3' miRNA: 3'- -CCC--UCUUGCaGAUGG---------------UUuaGCGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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