miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 16975 1.11 0.000161
Target:  5'- gAGAUGACGCUCCGGGCCCGCGACGCCg -3'
miRNA:   3'- -UCUACUGCGAGGCCCGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 26241 0.82 0.027762
Target:  5'- cAGcgGACGCauaCGGGUCCGCGACGUCg -3'
miRNA:   3'- -UCuaCUGCGag-GCCCGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14033 0.77 0.06807
Target:  5'- ---gGGCGCUUCGGGCCCagucCGACGCUc -3'
miRNA:   3'- ucuaCUGCGAGGCCCGGGc---GCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 20333 0.75 0.099977
Target:  5'- uGGAUGAa-CUCUGGGCCa-CGGCGCCu -3'
miRNA:   3'- -UCUACUgcGAGGCCCGGgcGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 19159 0.74 0.117289
Target:  5'- cGGGUGcgGCGCacuccgUCCGGGCCCGgCGccugcuccgccgcGCGCCg -3'
miRNA:   3'- -UCUAC--UGCG------AGGCCCGGGC-GC-------------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14466 0.74 0.120812
Target:  5'- cGAUG-CGCUcccgccucucCCGGGCCaucuGCGACGUCa -3'
miRNA:   3'- uCUACuGCGA----------GGCCCGGg---CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 10844 0.74 0.120812
Target:  5'- gAGGUGGCaugcccccaGCgucuucCCGGcGCCCGUGugGCCg -3'
miRNA:   3'- -UCUACUG---------CGa-----GGCC-CGGGCGCugCGG- -5'
11548 5' -61.6 NC_003085.1 + 38159 0.73 0.138097
Target:  5'- uGGUGGCGCUCCccG-CCGCGGCGCa -3'
miRNA:   3'- uCUACUGCGAGGccCgGGCGCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 23764 0.72 0.157625
Target:  5'- aGGA-GGCuGCUgCgCGGGCCCGCugcgugGACGCCu -3'
miRNA:   3'- -UCUaCUG-CGA-G-GCCCGGGCG------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 34381 0.72 0.157625
Target:  5'- ---gGACGCcUCGGugcccuGCCCGCGACGCUc -3'
miRNA:   3'- ucuaCUGCGaGGCC------CGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 38282 0.72 0.157625
Target:  5'- cGGAUGGCGCgagCuCGGgcuuuGCCUGUGACgGCCa -3'
miRNA:   3'- -UCUACUGCGa--G-GCC-----CGGGCGCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 44659 0.71 0.174555
Target:  5'- cGGUGccGgGCUuuGGGCCCGUccuggcgGAUGCCa -3'
miRNA:   3'- uCUAC--UgCGAggCCCGGGCG-------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 19086 0.71 0.184328
Target:  5'- aGGAcuUGcCGCUaccaaCGGGCCCGaCGAUGCa -3'
miRNA:   3'- -UCU--ACuGCGAg----GCCCGGGC-GCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 18689 0.71 0.184328
Target:  5'- aGGGUGACGCcggUCaGuGGCCCGCccCGCCu -3'
miRNA:   3'- -UCUACUGCG---AGgC-CCGGGCGcuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 43644 0.71 0.189149
Target:  5'- ---cGugGCgCCGGGUCgGUGACGCg -3'
miRNA:   3'- ucuaCugCGaGGCCCGGgCGCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 11779 0.7 0.199126
Target:  5'- cGGcgGcgccGCGCUCCGGGCgUGuCGGCuGCCc -3'
miRNA:   3'- -UCuaC----UGCGAGGCCCGgGC-GCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 5256 0.7 0.199126
Target:  5'- ---cGACGCUgCGGGCgCGCGGCaGUa -3'
miRNA:   3'- ucuaCUGCGAgGCCCGgGCGCUG-CGg -5'
11548 5' -61.6 NC_003085.1 + 42454 0.7 0.214948
Target:  5'- gGGA--GCGgUCCGugucgaGGCCCGUGGCGUCa -3'
miRNA:   3'- -UCUacUGCgAGGC------CCGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 28520 0.7 0.214948
Target:  5'- cGGUgGACGCgUCaGGGCgaauCCGCGGCGUCg -3'
miRNA:   3'- uCUA-CUGCG-AGgCCCG----GGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 42754 0.7 0.220457
Target:  5'- gAGAcacuUGACGaguaCCGGGCCCGC-ACGgCg -3'
miRNA:   3'- -UCU----ACUGCga--GGCCCGGGCGcUGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.