miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 491 0.68 0.310726
Target:  5'- cGGgcGAgGCUgaGGGCCUGCGuuuggaGCCg -3'
miRNA:   3'- -UCuaCUgCGAggCCCGGGCGCug----CGG- -5'
11548 5' -61.6 NC_003085.1 + 3348 0.7 0.220457
Target:  5'- cAGAcGACGCUCCccgacGCCCGUGA-GCCc -3'
miRNA:   3'- -UCUaCUGCGAGGcc---CGGGCGCUgCGG- -5'
11548 5' -61.6 NC_003085.1 + 4069 0.68 0.296277
Target:  5'- uGAcGGCGCUCCGccuccugguggaGcGCCCGCacuCGCCg -3'
miRNA:   3'- uCUaCUGCGAGGC------------C-CGGGCGcu-GCGG- -5'
11548 5' -61.6 NC_003085.1 + 5256 0.7 0.199126
Target:  5'- ---cGACGCUgCGGGCgCGCGGCaGUa -3'
miRNA:   3'- ucuaCUGCGAgGCCCGgGCGCUG-CGg -5'
11548 5' -61.6 NC_003085.1 + 6096 0.66 0.373807
Target:  5'- --cUGGCGCggcgUCCGGGCguacauCCGCGcccaGCCg -3'
miRNA:   3'- ucuACUGCG----AGGCCCG------GGCGCug--CGG- -5'
11548 5' -61.6 NC_003085.1 + 6734 0.67 0.324944
Target:  5'- cGAUGACcgauGgUCCGacugcccGGCCUGCcGCGCCg -3'
miRNA:   3'- uCUACUG----CgAGGC-------CCGGGCGcUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 7532 0.67 0.325705
Target:  5'- cGAgGACGCg-CGGGCCgaggggUGUGACGUCg -3'
miRNA:   3'- uCUaCUGCGagGCCCGG------GCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 9662 0.66 0.390877
Target:  5'- cGGAUGGCGgagagacgCCGGuGCUCGgCGGCGgCa -3'
miRNA:   3'- -UCUACUGCga------GGCC-CGGGC-GCUGCgG- -5'
11548 5' -61.6 NC_003085.1 + 9777 0.68 0.303436
Target:  5'- ---aGGCGUUCCGGcGCUCcagucugcaGgGACGCCa -3'
miRNA:   3'- ucuaCUGCGAGGCC-CGGG---------CgCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 10844 0.74 0.120812
Target:  5'- gAGGUGGCaugcccccaGCgucuucCCGGcGCCCGUGugGCCg -3'
miRNA:   3'- -UCUACUG---------CGa-----GGCC-CGGGCGCugCGG- -5'
11548 5' -61.6 NC_003085.1 + 11779 0.7 0.199126
Target:  5'- cGGcgGcgccGCGCUCCGGGCgUGuCGGCuGCCc -3'
miRNA:   3'- -UCuaC----UGCGAGGCCCGgGC-GCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 11865 0.67 0.333394
Target:  5'- cGAUGGgGCagCCGacacGCCCggagcGCGGCGCCg -3'
miRNA:   3'- uCUACUgCGa-GGCc---CGGG-----CGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 12098 0.69 0.243706
Target:  5'- cGGGUGACGCgcgcaagUCGGacGCCCcCGAgGCCu -3'
miRNA:   3'- -UCUACUGCGa------GGCC--CGGGcGCUgCGG- -5'
11548 5' -61.6 NC_003085.1 + 12225 0.68 0.310726
Target:  5'- gGGAUGGgGCUCCaaggcuGGGCCCauGCGgaacgaguucauGCGCg -3'
miRNA:   3'- -UCUACUgCGAGG------CCCGGG--CGC------------UGCGg -5'
11548 5' -61.6 NC_003085.1 + 12410 0.66 0.412021
Target:  5'- -uGUGGCGCgugcccuugcccaggUUCGGGUCgGUGuGCGCCg -3'
miRNA:   3'- ucUACUGCG---------------AGGCCCGGgCGC-UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 12819 0.66 0.388284
Target:  5'- --cUGACGgUCCGGGCggaugcgcuguuggCCGCcaAUGCCa -3'
miRNA:   3'- ucuACUGCgAGGCCCG--------------GGCGc-UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 13657 0.68 0.296277
Target:  5'- -cAUGGCGCgccUCCGGuGCCCacguccacGCG-CGCCu -3'
miRNA:   3'- ucUACUGCG---AGGCC-CGGG--------CGCuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14033 0.77 0.06807
Target:  5'- ---gGGCGCUUCGGGCCCagucCGACGCUc -3'
miRNA:   3'- ucuaCUGCGAGGCCCGGGc---GCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14375 0.66 0.382279
Target:  5'- --cUGGCGaCUCUuacugaGGGCUgCGCGGCGCUu -3'
miRNA:   3'- ucuACUGC-GAGG------CCCGG-GCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 14466 0.74 0.120812
Target:  5'- cGAUG-CGCUcccgccucucCCGGGCCaucuGCGACGUCa -3'
miRNA:   3'- uCUACuGCGA----------GGCCCGGg---CGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.