miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11548 5' -61.6 NC_003085.1 + 17759 0.68 0.303436
Target:  5'- gAGAUGGCGCgagagauugCUGaGGCCCGCucauGACaCCc -3'
miRNA:   3'- -UCUACUGCGa--------GGC-CCGGGCG----CUGcGG- -5'
11548 5' -61.6 NC_003085.1 + 48944 0.69 0.231836
Target:  5'- gAGGgcagcGCGCaUCCGguccGGCCCGCG-CGCCu -3'
miRNA:   3'- -UCUac---UGCG-AGGC----CCGGGCGCuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 16700 0.69 0.231836
Target:  5'- gGGcgGGgGCUUgGGGCuuGCGACGg- -3'
miRNA:   3'- -UCuaCUgCGAGgCCCGggCGCUGCgg -5'
11548 5' -61.6 NC_003085.1 + 12098 0.69 0.243706
Target:  5'- cGGGUGACGCgcgcaagUCGGacGCCCcCGAgGCCu -3'
miRNA:   3'- -UCUACUGCGa------GGCC--CGGGcGCUgCGG- -5'
11548 5' -61.6 NC_003085.1 + 27908 0.69 0.262453
Target:  5'- -cAUGGCcCUCgCGGGCCgCGCGugGUUc -3'
miRNA:   3'- ucUACUGcGAG-GCCCGG-GCGCugCGG- -5'
11548 5' -61.6 NC_003085.1 + 17842 0.69 0.262453
Target:  5'- --cUGGgGCagugCUGGuGCCCGCaGGCGCCg -3'
miRNA:   3'- ucuACUgCGa---GGCC-CGGGCG-CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 23688 0.68 0.268957
Target:  5'- ----cACGCagCGGGCCCGCGcaGCaGCCu -3'
miRNA:   3'- ucuacUGCGagGCCCGGGCGC--UG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 30338 0.68 0.268957
Target:  5'- uGGcgGACGCUgucgCgGGGCgcaCUGCGGCGUCu -3'
miRNA:   3'- -UCuaCUGCGA----GgCCCG---GGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 4069 0.68 0.296277
Target:  5'- uGAcGGCGCUCCGccuccugguggaGcGCCCGCacuCGCCg -3'
miRNA:   3'- uCUaCUGCGAGGC------------C-CGGGCGcu-GCGG- -5'
11548 5' -61.6 NC_003085.1 + 17942 0.69 0.231836
Target:  5'- ---cGGCGCUCUGGGCuCUGCuGgggcaccugaaGCGCCg -3'
miRNA:   3'- ucuaCUGCGAGGCCCG-GGCG-C-----------UGCGG- -5'
11548 5' -61.6 NC_003085.1 + 3348 0.7 0.220457
Target:  5'- cAGAcGACGCUCCccgacGCCCGUGA-GCCc -3'
miRNA:   3'- -UCUaCUGCGAGGcc---CGGGCGCUgCGG- -5'
11548 5' -61.6 NC_003085.1 + 42454 0.7 0.214948
Target:  5'- gGGA--GCGgUCCGugucgaGGCCCGUGGCGUCa -3'
miRNA:   3'- -UCUacUGCgAGGC------CCGGGCGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 20333 0.75 0.099977
Target:  5'- uGGAUGAa-CUCUGGGCCa-CGGCGCCu -3'
miRNA:   3'- -UCUACUgcGAGGCCCGGgcGCUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 38159 0.73 0.138097
Target:  5'- uGGUGGCGCUCCccG-CCGCGGCGCa -3'
miRNA:   3'- uCUACUGCGAGGccCgGGCGCUGCGg -5'
11548 5' -61.6 NC_003085.1 + 38282 0.72 0.157625
Target:  5'- cGGAUGGCGCgagCuCGGgcuuuGCCUGUGACgGCCa -3'
miRNA:   3'- -UCUACUGCGa--G-GCC-----CGGGCGCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 44659 0.71 0.174555
Target:  5'- cGGUGccGgGCUuuGGGCCCGUccuggcgGAUGCCa -3'
miRNA:   3'- uCUAC--UgCGAggCCCGGGCG-------CUGCGG- -5'
11548 5' -61.6 NC_003085.1 + 18689 0.71 0.184328
Target:  5'- aGGGUGACGCcggUCaGuGGCCCGCccCGCCu -3'
miRNA:   3'- -UCUACUGCG---AGgC-CCGGGCGcuGCGG- -5'
11548 5' -61.6 NC_003085.1 + 5256 0.7 0.199126
Target:  5'- ---cGACGCUgCGGGCgCGCGGCaGUa -3'
miRNA:   3'- ucuaCUGCGAgGCCCGgGCGCUG-CGg -5'
11548 5' -61.6 NC_003085.1 + 11779 0.7 0.199126
Target:  5'- cGGcgGcgccGCGCUCCGGGCgUGuCGGCuGCCc -3'
miRNA:   3'- -UCuaC----UGCGAGGCCCGgGC-GCUG-CGG- -5'
11548 5' -61.6 NC_003085.1 + 28520 0.7 0.214948
Target:  5'- cGGUgGACGCgUCaGGGCgaauCCGCGGCGUCg -3'
miRNA:   3'- uCUA-CUGCG-AGgCCCG----GGCGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.