miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 3' -59.3 NC_003085.1 + 20579 1.08 0.000344
Target:  5'- gACGCAGAUGGCCAGCCUGUACGGCCAa -3'
miRNA:   3'- -UGCGUCUACCGGUCGGACAUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 40816 0.77 0.081346
Target:  5'- cGCGCGucccGGCCGGCCUGUaccugacgGCGGCCGg -3'
miRNA:   3'- -UGCGUcua-CCGGUCGGACA--------UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 38277 0.74 0.124193
Target:  5'- gACGaCGGAUGGCgCGagcucgggcuuuGCCUGUgACGGCCAg -3'
miRNA:   3'- -UGC-GUCUACCG-GU------------CGGACA-UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 1386 0.74 0.124193
Target:  5'- uCGCAGu--GCCAGCCUucGCGGCCAc -3'
miRNA:   3'- uGCGUCuacCGGUCGGAcaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 48966 0.73 0.154876
Target:  5'- gGCGCGGcUGGCgGGCCaaugcuccgUGUGCGGCg- -3'
miRNA:   3'- -UGCGUCuACCGgUCGG---------ACAUGCCGgu -5'
11559 3' -59.3 NC_003085.1 + 34626 0.73 0.163112
Target:  5'- gGCGCAcGcgGGCCGGCUgGUggcgcucGCGGCCGc -3'
miRNA:   3'- -UGCGU-CuaCCGGUCGGaCA-------UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 20104 0.72 0.168058
Target:  5'- cCGCAGGUGGCgGGgCUGgagucCGGCCu -3'
miRNA:   3'- uGCGUCUACCGgUCgGACau---GCCGGu -5'
11559 3' -59.3 NC_003085.1 + 25152 0.71 0.202781
Target:  5'- aGCGCGGuGUGGCCggcgaccguGGCCUGgugGCGGUg- -3'
miRNA:   3'- -UGCGUC-UACCGG---------UCGGACa--UGCCGgu -5'
11559 3' -59.3 NC_003085.1 + 23214 0.71 0.208222
Target:  5'- -gGCAG-UGGCCGGgCUGcuccagACGGCCGc -3'
miRNA:   3'- ugCGUCuACCGGUCgGACa-----UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 26219 0.7 0.249918
Target:  5'- gACGUcGGUGGCCAGCagcccgaGUuccACGGCCGc -3'
miRNA:   3'- -UGCGuCUACCGGUCGga-----CA---UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 38315 0.7 0.249918
Target:  5'- -aGUAGGUGGCCAccGCCgacGUGCuGCCGu -3'
miRNA:   3'- ugCGUCUACCGGU--CGGa--CAUGcCGGU- -5'
11559 3' -59.3 NC_003085.1 + 5234 0.7 0.249918
Target:  5'- cGCGCcaGGAUGGCCGcuGCCUucgcGU-CGGCCu -3'
miRNA:   3'- -UGCG--UCUACCGGU--CGGA----CAuGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 454 0.69 0.263036
Target:  5'- gGCGCGGAgGGCCAGCCggcgcUGUugcaggugcccACGGgCGa -3'
miRNA:   3'- -UGCGUCUaCCGGUCGG-----ACA-----------UGCCgGU- -5'
11559 3' -59.3 NC_003085.1 + 35896 0.69 0.269802
Target:  5'- cCGCGGAgucccagGGCCAuGCC---ACGGCCAg -3'
miRNA:   3'- uGCGUCUa------CCGGU-CGGacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 9757 0.69 0.276708
Target:  5'- cUGCAGGgacGCCAGCCgGUgcucgacguugGCGGCCGu -3'
miRNA:   3'- uGCGUCUac-CGGUCGGaCA-----------UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 48277 0.69 0.276708
Target:  5'- -gGCAGGUGGCCgaauccaaggugGGCCaccucGUGCGcGCCGa -3'
miRNA:   3'- ugCGUCUACCGG------------UCGGa----CAUGC-CGGU- -5'
11559 3' -59.3 NC_003085.1 + 23403 0.69 0.283754
Target:  5'- gGCGCu--UGGCCGGCCaGaGCGGCg- -3'
miRNA:   3'- -UGCGucuACCGGUCGGaCaUGCCGgu -5'
11559 3' -59.3 NC_003085.1 + 10544 0.69 0.283754
Target:  5'- -aGCAGGUcGGCCAGCCgagGgGcGCCAa -3'
miRNA:   3'- ugCGUCUA-CCGGUCGGacaUgC-CGGU- -5'
11559 3' -59.3 NC_003085.1 + 22381 0.69 0.290941
Target:  5'- gGCGCGGGcagccUGGCUgaugaGGUucuuCUGUGCGGCCu -3'
miRNA:   3'- -UGCGUCU-----ACCGG-----UCG----GACAUGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 15343 0.69 0.29827
Target:  5'- gGCGCGGcgGGUgAGCUcGgccGCGGCCu -3'
miRNA:   3'- -UGCGUCuaCCGgUCGGaCa--UGCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.