miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 3' -59.3 NC_003085.1 + 20579 1.08 0.000344
Target:  5'- gACGCAGAUGGCCAGCCUGUACGGCCAa -3'
miRNA:   3'- -UGCGUCUACCGGUCGGACAUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 48986 0.66 0.454105
Target:  5'- cGCGCuGAUGGCCGucgugcGCUccuUGU-UGGCCGg -3'
miRNA:   3'- -UGCGuCUACCGGU------CGG---ACAuGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 35973 0.66 0.444326
Target:  5'- cGCGUAGggGGCCAgGCCg--ACGcCCAg -3'
miRNA:   3'- -UGCGUCuaCCGGU-CGGacaUGCcGGU- -5'
11559 3' -59.3 NC_003085.1 + 48190 0.66 0.434666
Target:  5'- cGCGCAcgaGGUGGCCcacCUUGgauuCGGCCAc -3'
miRNA:   3'- -UGCGU---CUACCGGuc-GGACau--GCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 4331 0.67 0.379382
Target:  5'- uACGCAGuaccUGGaCCGGCagcacacgGUgaGCGGCCAg -3'
miRNA:   3'- -UGCGUCu---ACC-GGUCGga------CA--UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 8940 0.67 0.370636
Target:  5'- gUGCAGcgcGUGGCCAaCCUGcGCugGGCCAa -3'
miRNA:   3'- uGCGUC---UACCGGUcGGACaUG--CCGGU- -5'
11559 3' -59.3 NC_003085.1 + 41472 0.68 0.337053
Target:  5'- gGCGCGGGUGaaguaccgcGCCAGCgCUGccuacCGGCCc -3'
miRNA:   3'- -UGCGUCUAC---------CGGUCG-GACau---GCCGGu -5'
11559 3' -59.3 NC_003085.1 + 18554 0.68 0.337053
Target:  5'- cACG-AGGUGGCgGGCaaggACGGCCAa -3'
miRNA:   3'- -UGCgUCUACCGgUCGgacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 23688 0.68 0.329011
Target:  5'- cACGCAGcgGGCCcgcgcagcAGCCUccuccGUcaagACGGCCc -3'
miRNA:   3'- -UGCGUCuaCCGG--------UCGGA-----CA----UGCCGGu -5'
11559 3' -59.3 NC_003085.1 + 35896 0.69 0.269802
Target:  5'- cCGCGGAgucccagGGCCAuGCC---ACGGCCAg -3'
miRNA:   3'- uGCGUCUa------CCGGU-CGGacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 40816 0.77 0.081346
Target:  5'- cGCGCGucccGGCCGGCCUGUaccugacgGCGGCCGg -3'
miRNA:   3'- -UGCGUcua-CCGGUCGGACA--------UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 38277 0.74 0.124193
Target:  5'- gACGaCGGAUGGCgCGagcucgggcuuuGCCUGUgACGGCCAg -3'
miRNA:   3'- -UGC-GUCUACCG-GU------------CGGACA-UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 20104 0.72 0.168058
Target:  5'- cCGCAGGUGGCgGGgCUGgagucCGGCCu -3'
miRNA:   3'- uGCGUCUACCGgUCgGACau---GCCGGu -5'
11559 3' -59.3 NC_003085.1 + 25152 0.71 0.202781
Target:  5'- aGCGCGGuGUGGCCggcgaccguGGCCUGgugGCGGUg- -3'
miRNA:   3'- -UGCGUC-UACCGG---------UCGGACa--UGCCGgu -5'
11559 3' -59.3 NC_003085.1 + 23214 0.71 0.208222
Target:  5'- -gGCAG-UGGCCGGgCUGcuccagACGGCCGc -3'
miRNA:   3'- ugCGUCuACCGGUCgGACa-----UGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 454 0.69 0.263036
Target:  5'- gGCGCGGAgGGCCAGCCggcgcUGUugcaggugcccACGGgCGa -3'
miRNA:   3'- -UGCGUCUaCCGGUCGG-----ACA-----------UGCCgGU- -5'
11559 3' -59.3 NC_003085.1 + 1386 0.74 0.124193
Target:  5'- uCGCAGu--GCCAGCCUucGCGGCCAc -3'
miRNA:   3'- uGCGUCuacCGGUCGGAcaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 36834 0.66 0.454105
Target:  5'- uACGCcGAcGGCgaGGCCg--GCGGCCGa -3'
miRNA:   3'- -UGCGuCUaCCGg-UCGGacaUGCCGGU- -5'
11559 3' -59.3 NC_003085.1 + 21037 0.66 0.45214
Target:  5'- uUGCGGAaGGCCAGCCaccgcaccuCGuGCCAg -3'
miRNA:   3'- uGCGUCUaCCGGUCGGacau-----GC-CGGU- -5'
11559 3' -59.3 NC_003085.1 + 42029 0.66 0.444326
Target:  5'- aGCGCAGGUGcGUCucgguggcGGCaaGUGgGGCCAu -3'
miRNA:   3'- -UGCGUCUAC-CGG--------UCGgaCAUgCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.