Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11559 | 3' | -59.3 | NC_003085.1 | + | 454 | 0.69 | 0.263036 |
Target: 5'- gGCGCGGAgGGCCAGCCggcgcUGUugcaggugcccACGGgCGa -3' miRNA: 3'- -UGCGUCUaCCGGUCGG-----ACA-----------UGCCgGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 641 | 0.66 | 0.406434 |
Target: 5'- -gGCGGG-GGCCGcCCUGcacuucgACGGCCAc -3' miRNA: 3'- ugCGUCUaCCGGUcGGACa------UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 1386 | 0.74 | 0.124193 |
Target: 5'- uCGCAGu--GCCAGCCUucGCGGCCAc -3' miRNA: 3'- uGCGUCuacCGGUCGGAcaUGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 2174 | 0.68 | 0.313355 |
Target: 5'- gGCGCcGAUGGC--GCCgagGUGCGGCg- -3' miRNA: 3'- -UGCGuCUACCGguCGGa--CAUGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 4331 | 0.67 | 0.379382 |
Target: 5'- uACGCAGuaccUGGaCCGGCagcacacgGUgaGCGGCCAg -3' miRNA: 3'- -UGCGUCu---ACC-GGUCGga------CA--UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 5234 | 0.7 | 0.249918 |
Target: 5'- cGCGCcaGGAUGGCCGcuGCCUucgcGU-CGGCCu -3' miRNA: 3'- -UGCG--UCUACCGGU--CGGA----CAuGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 8569 | 0.67 | 0.379382 |
Target: 5'- uGCGCgucguacuGGcgGGCCAgcGCCUcgGCGGCCu -3' miRNA: 3'- -UGCG--------UCuaCCGGU--CGGAcaUGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 8940 | 0.67 | 0.370636 |
Target: 5'- gUGCAGcgcGUGGCCAaCCUGcGCugGGCCAa -3' miRNA: 3'- uGCGUC---UACCGGUcGGACaUG--CCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 9757 | 0.69 | 0.276708 |
Target: 5'- cUGCAGGgacGCCAGCCgGUgcucgacguugGCGGCCGu -3' miRNA: 3'- uGCGUCUac-CGGUCGGaCA-----------UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 10544 | 0.69 | 0.283754 |
Target: 5'- -aGCAGGUcGGCCAGCCgagGgGcGCCAa -3' miRNA: 3'- ugCGUCUA-CCGGUCGGacaUgC-CGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 15343 | 0.69 | 0.29827 |
Target: 5'- gGCGCGGcgGGUgAGCUcGgccGCGGCCu -3' miRNA: 3'- -UGCGUCuaCCGgUCGGaCa--UGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 18554 | 0.68 | 0.337053 |
Target: 5'- cACG-AGGUGGCgGGCaaggACGGCCAa -3' miRNA: 3'- -UGCgUCUACCGgUCGgacaUGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 20104 | 0.72 | 0.168058 |
Target: 5'- cCGCAGGUGGCgGGgCUGgagucCGGCCu -3' miRNA: 3'- uGCGUCUACCGgUCgGACau---GCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 20579 | 1.08 | 0.000344 |
Target: 5'- gACGCAGAUGGCCAGCCUGUACGGCCAa -3' miRNA: 3'- -UGCGUCUACCGGUCGGACAUGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 21037 | 0.66 | 0.45214 |
Target: 5'- uUGCGGAaGGCCAGCCaccgcaccuCGuGCCAg -3' miRNA: 3'- uGCGUCUaCCGGUCGGacau-----GC-CGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 22381 | 0.69 | 0.290941 |
Target: 5'- gGCGCGGGcagccUGGCUgaugaGGUucuuCUGUGCGGCCu -3' miRNA: 3'- -UGCGUCU-----ACCGG-----UCG----GACAUGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23035 | 0.67 | 0.353563 |
Target: 5'- -gGCAGAcugGGCCGGCUcGUcCGGCUu -3' miRNA: 3'- ugCGUCUa--CCGGUCGGaCAuGCCGGu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23214 | 0.71 | 0.208222 |
Target: 5'- -gGCAG-UGGCCGGgCUGcuccagACGGCCGc -3' miRNA: 3'- ugCGUCuACCGGUCgGACa-----UGCCGGU- -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23403 | 0.69 | 0.283754 |
Target: 5'- gGCGCu--UGGCCGGCCaGaGCGGCg- -3' miRNA: 3'- -UGCGucuACCGGUCGGaCaUGCCGgu -5' |
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11559 | 3' | -59.3 | NC_003085.1 | + | 23688 | 0.68 | 0.329011 |
Target: 5'- cACGCAGcgGGCCcgcgcagcAGCCUccuccGUcaagACGGCCc -3' miRNA: 3'- -UGCGUCuaCCGG--------UCGGA-----CA----UGCCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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