miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 5' -58.9 NC_003085.1 + 20614 1.12 0.000257
Target:  5'- aGGUGAGCGUCAGCCGGCGCUUCGCGGa -3'
miRNA:   3'- -CCACUCGCAGUCGGCCGCGAAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 4233 0.84 0.032479
Target:  5'- -cUGAGCGUCAGCCGggccgcaGCGCUUCGCGc -3'
miRNA:   3'- ccACUCGCAGUCGGC-------CGCGAAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 41023 0.75 0.155004
Target:  5'- cGUGGGCGUC-GCUGGCguccuccugggcgGCUUgGCGGg -3'
miRNA:   3'- cCACUCGCAGuCGGCCG-------------CGAAgCGCC- -5'
11559 5' -58.9 NC_003085.1 + 11472 0.73 0.212978
Target:  5'- cGGcgGuGCGUCAGCCGGCGgUagCGCu- -3'
miRNA:   3'- -CCa-CuCGCAGUCGGCCGCgAa-GCGcc -5'
11559 5' -58.9 NC_003085.1 + 15029 0.72 0.229985
Target:  5'- aGGUGGGCc---GCCaGCGCUUCGCGc -3'
miRNA:   3'- -CCACUCGcaguCGGcCGCGAAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 453 0.72 0.235904
Target:  5'- cGGcgcgGAGgGcCAGCCGGCGCUgUUGCaGGu -3'
miRNA:   3'- -CCa---CUCgCaGUCGGCCGCGA-AGCG-CC- -5'
11559 5' -58.9 NC_003085.1 + 22826 0.71 0.280964
Target:  5'- cGGcGGGCGUC-GUCGGCGCgggUGuCGGa -3'
miRNA:   3'- -CCaCUCGCAGuCGGCCGCGaa-GC-GCC- -5'
11559 5' -58.9 NC_003085.1 + 24699 0.71 0.280964
Target:  5'- uGGUGcuGGaCGgCGGCauCGGCgGCUUCGCGGg -3'
miRNA:   3'- -CCAC--UC-GCaGUCG--GCCG-CGAAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 25386 0.7 0.287933
Target:  5'- cGGUGgccaccacGGCGUCguccaccuGGCCGGC-CgUCGCGGu -3'
miRNA:   3'- -CCAC--------UCGCAG--------UCGGCCGcGaAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 12188 0.7 0.302275
Target:  5'- aGGUGGGCGaC-GUCGaGCGCUUCcCGGc -3'
miRNA:   3'- -CCACUCGCaGuCGGC-CGCGAAGcGCC- -5'
11559 5' -58.9 NC_003085.1 + 48743 0.7 0.309651
Target:  5'- cGUGAGCGgCGcGUCaGGCGCcaCGCGGa -3'
miRNA:   3'- cCACUCGCaGU-CGG-CCGCGaaGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 29097 0.7 0.309651
Target:  5'- gGGUugcccGGCGUCAGCagCGGCGaCgcggCGCGGa -3'
miRNA:   3'- -CCAc----UCGCAGUCG--GCCGC-Gaa--GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 48779 0.7 0.32481
Target:  5'- cGUG-GCGaCuGgCGGCGCUucuUCGCGGg -3'
miRNA:   3'- cCACuCGCaGuCgGCCGCGA---AGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 23321 0.69 0.348571
Target:  5'- uGUGcGCGggCGGCgCGGUGCgaagCGCGGc -3'
miRNA:   3'- cCACuCGCa-GUCG-GCCGCGaa--GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 32157 0.69 0.348571
Target:  5'- cGGUGgguuacGGCGUCGGCCaGGCuGCgccaGUGGu -3'
miRNA:   3'- -CCAC------UCGCAGUCGG-CCG-CGaag-CGCC- -5'
11559 5' -58.9 NC_003085.1 + 42731 0.69 0.355937
Target:  5'- cGUGGGCGUCGgggcgauGCgGGCGCg--GUGGa -3'
miRNA:   3'- cCACUCGCAGU-------CGgCCGCGaagCGCC- -5'
11559 5' -58.9 NC_003085.1 + 34811 0.69 0.356762
Target:  5'- aGUGGGCGggAGCCuucGGCGCUgaccgagCGCGu -3'
miRNA:   3'- cCACUCGCagUCGG---CCGCGAa------GCGCc -5'
11559 5' -58.9 NC_003085.1 + 3083 0.69 0.356762
Target:  5'- -cUGGGCGUCGuCCGuGCGCccaGCGGg -3'
miRNA:   3'- ccACUCGCAGUcGGC-CGCGaagCGCC- -5'
11559 5' -58.9 NC_003085.1 + 20931 0.69 0.373546
Target:  5'- gGGUGGGCGgcaccgCAGCggcgagcuCGGCGCcggUCGCc- -3'
miRNA:   3'- -CCACUCGCa-----GUCG--------GCCGCGa--AGCGcc -5'
11559 5' -58.9 NC_003085.1 + 10783 0.68 0.382137
Target:  5'- -uUGc-CGUCAGCCaGUGCcUCGCGGg -3'
miRNA:   3'- ccACucGCAGUCGGcCGCGaAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.