miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 5' -58.9 NC_003085.1 + 25260 0.66 0.501794
Target:  5'- cGGcGGGCGUCGucGUCGGCGCgcccgucuaccucacCGCGa -3'
miRNA:   3'- -CCaCUCGCAGU--CGGCCGCGaa-------------GCGCc -5'
11559 5' -58.9 NC_003085.1 + 39486 0.68 0.407782
Target:  5'- cGUGcGCGUCgaggcgcucgagaAGCCGGUGCgccucgUCGCuGGc -3'
miRNA:   3'- cCACuCGCAG-------------UCGGCCGCGa-----AGCG-CC- -5'
11559 5' -58.9 NC_003085.1 + 6642 0.68 0.408685
Target:  5'- cGUGAGCG-CAagguGCUGGCGUcccaacUCGUGGa -3'
miRNA:   3'- cCACUCGCaGU----CGGCCGCGa-----AGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 47741 0.68 0.412311
Target:  5'- cGGUGcGCGUagcgucgcaauucgaCGGCCaGGCGC-UCGCaGGc -3'
miRNA:   3'- -CCACuCGCA---------------GUCGG-CCGCGaAGCG-CC- -5'
11559 5' -58.9 NC_003085.1 + 31785 0.68 0.427011
Target:  5'- cGGuUGGGCGaagCGGcCCGGCcGC-UCGCGa -3'
miRNA:   3'- -CC-ACUCGCa--GUC-GGCCG-CGaAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 35759 0.67 0.436356
Target:  5'- -cUGAGCaaCuGgUGGUGCUUCGCGGc -3'
miRNA:   3'- ccACUCGcaGuCgGCCGCGAAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 40355 0.67 0.436356
Target:  5'- cGGUGGGCa--AGCCGcUGCUgccCGCGGc -3'
miRNA:   3'- -CCACUCGcagUCGGCcGCGAa--GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 7464 0.67 0.465074
Target:  5'- cGGUGGGCGUCGcGCCucaCGCUggaggUGaCGGg -3'
miRNA:   3'- -CCACUCGCAGU-CGGcc-GCGAa----GC-GCC- -5'
11559 5' -58.9 NC_003085.1 + 23884 0.67 0.484756
Target:  5'- cGUGAGCGaacggcagCAGCCGuccacGCGCagaaagUCGCGa -3'
miRNA:   3'- cCACUCGCa-------GUCGGC-----CGCGa-----AGCGCc -5'
11559 5' -58.9 NC_003085.1 + 34811 0.69 0.356762
Target:  5'- aGUGGGCGggAGCCuucGGCGCUgaccgagCGCGu -3'
miRNA:   3'- cCACUCGCagUCGG---CCGCGAa------GCGCc -5'
11559 5' -58.9 NC_003085.1 + 42731 0.69 0.355937
Target:  5'- cGUGGGCGUCGgggcgauGCgGGCGCg--GUGGa -3'
miRNA:   3'- cCACUCGCAGU-------CGgCCGCGaagCGCC- -5'
11559 5' -58.9 NC_003085.1 + 32157 0.69 0.348571
Target:  5'- cGGUGgguuacGGCGUCGGCCaGGCuGCgccaGUGGu -3'
miRNA:   3'- -CCAC------UCGCAGUCGG-CCG-CGaag-CGCC- -5'
11559 5' -58.9 NC_003085.1 + 4233 0.84 0.032479
Target:  5'- -cUGAGCGUCAGCCGggccgcaGCGCUUCGCGc -3'
miRNA:   3'- ccACUCGCAGUCGGC-------CGCGAAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 41023 0.75 0.155004
Target:  5'- cGUGGGCGUC-GCUGGCguccuccugggcgGCUUgGCGGg -3'
miRNA:   3'- cCACUCGCAGuCGGCCG-------------CGAAgCGCC- -5'
11559 5' -58.9 NC_003085.1 + 453 0.72 0.235904
Target:  5'- cGGcgcgGAGgGcCAGCCGGCGCUgUUGCaGGu -3'
miRNA:   3'- -CCa---CUCgCaGUCGGCCGCGA-AGCG-CC- -5'
11559 5' -58.9 NC_003085.1 + 24699 0.71 0.280964
Target:  5'- uGGUGcuGGaCGgCGGCauCGGCgGCUUCGCGGg -3'
miRNA:   3'- -CCAC--UC-GCaGUCG--GCCG-CGAAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 12188 0.7 0.302275
Target:  5'- aGGUGGGCGaC-GUCGaGCGCUUCcCGGc -3'
miRNA:   3'- -CCACUCGCaGuCGGC-CGCGAAGcGCC- -5'
11559 5' -58.9 NC_003085.1 + 29097 0.7 0.309651
Target:  5'- gGGUugcccGGCGUCAGCagCGGCGaCgcggCGCGGa -3'
miRNA:   3'- -CCAc----UCGCAGUCG--GCCGC-Gaa--GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 48743 0.7 0.309651
Target:  5'- cGUGAGCGgCGcGUCaGGCGCcaCGCGGa -3'
miRNA:   3'- cCACUCGCaGU-CGG-CCGCGaaGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 48779 0.7 0.32481
Target:  5'- cGUG-GCGaCuGgCGGCGCUucuUCGCGGg -3'
miRNA:   3'- cCACuCGCaGuCgGCCGCGA---AGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.