miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11559 5' -58.9 NC_003085.1 + 453 0.72 0.235904
Target:  5'- cGGcgcgGAGgGcCAGCCGGCGCUgUUGCaGGu -3'
miRNA:   3'- -CCa---CUCgCaGUCGGCCGCGA-AGCG-CC- -5'
11559 5' -58.9 NC_003085.1 + 3083 0.69 0.356762
Target:  5'- -cUGGGCGUCGuCCGuGCGCccaGCGGg -3'
miRNA:   3'- ccACUCGCAGUcGGC-CGCGaagCGCC- -5'
11559 5' -58.9 NC_003085.1 + 4233 0.84 0.032479
Target:  5'- -cUGAGCGUCAGCCGggccgcaGCGCUUCGCGc -3'
miRNA:   3'- ccACUCGCAGUCGGC-------CGCGAAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 6642 0.68 0.408685
Target:  5'- cGUGAGCG-CAagguGCUGGCGUcccaacUCGUGGa -3'
miRNA:   3'- cCACUCGCaGU----CGGCCGCGa-----AGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 7464 0.67 0.465074
Target:  5'- cGGUGGGCGUCGcGCCucaCGCUggaggUGaCGGg -3'
miRNA:   3'- -CCACUCGCAGU-CGGcc-GCGAa----GC-GCC- -5'
11559 5' -58.9 NC_003085.1 + 8572 0.68 0.382137
Target:  5'- uGGUGcGCGUCguacuggcgGGCCaGCGCcUCgGCGGc -3'
miRNA:   3'- -CCACuCGCAG---------UCGGcCGCGaAG-CGCC- -5'
11559 5' -58.9 NC_003085.1 + 9753 0.67 0.436356
Target:  5'- --aGGGaCGcCAGCCGGUGCUcgacguUgGCGGc -3'
miRNA:   3'- ccaCUC-GCaGUCGGCCGCGA------AgCGCC- -5'
11559 5' -58.9 NC_003085.1 + 10262 0.67 0.478809
Target:  5'- gGGUGAGCaggucgcgcauugCAGCCGGgucCGCccgguccUCGCGGu -3'
miRNA:   3'- -CCACUCGca-----------GUCGGCC---GCGa------AGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 10783 0.68 0.382137
Target:  5'- -uUGc-CGUCAGCCaGUGCcUCGCGGg -3'
miRNA:   3'- ccACucGCAGUCGGcCGCGaAGCGCC- -5'
11559 5' -58.9 NC_003085.1 + 10843 0.67 0.484756
Target:  5'- aGGUGgcaugcccccAGCGUCuucCCGGCGCccgUGUGGc -3'
miRNA:   3'- -CCAC----------UCGCAGuc-GGCCGCGaa-GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 11472 0.73 0.212978
Target:  5'- cGGcgGuGCGUCAGCCGGCGgUagCGCu- -3'
miRNA:   3'- -CCa-CuCGCAGUCGGCCGCgAa-GCGcc -5'
11559 5' -58.9 NC_003085.1 + 11625 0.68 0.390858
Target:  5'- cGGUGcguuGGCG-CAGgccCCGGCGCUcgacgaacgCGCGGc -3'
miRNA:   3'- -CCAC----UCGCaGUC---GGCCGCGAa--------GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 12188 0.7 0.302275
Target:  5'- aGGUGGGCGaC-GUCGaGCGCUUCcCGGc -3'
miRNA:   3'- -CCACUCGCaGuCGGC-CGCGAAGcGCC- -5'
11559 5' -58.9 NC_003085.1 + 14702 0.68 0.408685
Target:  5'- aGGUGGGCGUCacacAGCCcaugaGCUUcgaCGCGGc -3'
miRNA:   3'- -CCACUCGCAG----UCGGccg--CGAA---GCGCC- -5'
11559 5' -58.9 NC_003085.1 + 15029 0.72 0.229985
Target:  5'- aGGUGGGCc---GCCaGCGCUUCGCGc -3'
miRNA:   3'- -CCACUCGcaguCGGcCGCGAAGCGCc -5'
11559 5' -58.9 NC_003085.1 + 15335 0.66 0.535577
Target:  5'- gGGUGAGC-UCGGCCGcG-GCcUC-CGGg -3'
miRNA:   3'- -CCACUCGcAGUCGGC-CgCGaAGcGCC- -5'
11559 5' -58.9 NC_003085.1 + 16421 0.67 0.474864
Target:  5'- cGGUGcccuuGuCGUCGGCCagagacaGCGCUUCGCc- -3'
miRNA:   3'- -CCACu----C-GCAGUCGGc------CGCGAAGCGcc -5'
11559 5' -58.9 NC_003085.1 + 18049 0.66 0.494746
Target:  5'- cGUGcccuGCGgcccgcgCuGCCGGCGCUUCagGUGGc -3'
miRNA:   3'- cCACu---CGCa------GuCGGCCGCGAAG--CGCC- -5'
11559 5' -58.9 NC_003085.1 + 18078 0.66 0.545976
Target:  5'- -uUGGGCGcCAGUCcGCGCUcUCGCa- -3'
miRNA:   3'- ccACUCGCaGUCGGcCGCGA-AGCGcc -5'
11559 5' -58.9 NC_003085.1 + 20255 0.66 0.535577
Target:  5'- aGGUGGcGCaGUC-GCUGGUGCcUCcgGCGGa -3'
miRNA:   3'- -CCACU-CG-CAGuCGGCCGCGaAG--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.