miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 15174 0.69 0.334669
Target:  5'- cUGCGcugacGGCC--CGGCUgaGCCGGUGCg -3'
miRNA:   3'- uACGU-----CCGGuuGCCGGaaCGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 5895 0.69 0.34294
Target:  5'- cUGCAGGgCUGAC-GCCUccCCGAUGCg -3'
miRNA:   3'- uACGUCC-GGUUGcCGGAacGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 48563 0.69 0.351358
Target:  5'- -cGCAGcGCuCAACgaGGCgCUUGCCGAgaGCa -3'
miRNA:   3'- uaCGUC-CG-GUUG--CCG-GAACGGCUa-CG- -5'
11561 5' -57.6 NC_003085.1 + 14606 0.69 0.358197
Target:  5'- cUGCAGGCCAccggggAguugguguccccucuCGGCCUugagguuguacuucuUGCgGAUGCg -3'
miRNA:   3'- uACGUCCGGU------U---------------GCCGGA---------------ACGgCUACG- -5'
11561 5' -57.6 NC_003085.1 + 23413 0.69 0.359921
Target:  5'- -gGC-GGCCGGCGGCgCUUGgCCGGccagaGCg -3'
miRNA:   3'- uaCGuCCGGUUGCCG-GAAC-GGCUa----CG- -5'
11561 5' -57.6 NC_003085.1 + 41058 0.68 0.368629
Target:  5'- -cGCuGGGCCAGC--CCUUGCCGcuUGCg -3'
miRNA:   3'- uaCG-UCCGGUUGccGGAACGGCu-ACG- -5'
11561 5' -57.6 NC_003085.1 + 32969 0.68 0.368629
Target:  5'- -cGUcgaAGGCgGACGGCC---CCGAUGCu -3'
miRNA:   3'- uaCG---UCCGgUUGCCGGaacGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 10764 0.68 0.377481
Target:  5'- -cGCGGGCC-GCGcGCaggGCUGGUGUg -3'
miRNA:   3'- uaCGUCCGGuUGC-CGgaaCGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 22588 0.68 0.377481
Target:  5'- -cGCGGcGCUucguGCGGCUUccgaUGUCGGUGCc -3'
miRNA:   3'- uaCGUC-CGGu---UGCCGGA----ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 31458 0.68 0.377481
Target:  5'- cGUGCGgcuGGCCucuuuGCGGCCgggGUCGA-GCu -3'
miRNA:   3'- -UACGU---CCGGu----UGCCGGaa-CGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 18391 0.68 0.377481
Target:  5'- uUGCGGcuGCCcuucgGACGGCCagcGCCGggGCg -3'
miRNA:   3'- uACGUC--CGG-----UUGCCGGaa-CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 24343 0.68 0.395607
Target:  5'- -aGCAGGUCGaguuGCGccuCCUUGCCGGaguucUGCa -3'
miRNA:   3'- uaCGUCCGGU----UGCc--GGAACGGCU-----ACG- -5'
11561 5' -57.6 NC_003085.1 + 34929 0.68 0.395607
Target:  5'- gGUGCAGGCgCAcGCGGCggagUUGCUGGccgGCg -3'
miRNA:   3'- -UACGUCCG-GU-UGCCGg---AACGGCUa--CG- -5'
11561 5' -57.6 NC_003085.1 + 43560 0.68 0.404878
Target:  5'- cUGgAGGCgGugGGCCguuUGUCGAgugggUGCg -3'
miRNA:   3'- uACgUCCGgUugCCGGa--ACGGCU-----ACG- -5'
11561 5' -57.6 NC_003085.1 + 8946 0.68 0.404878
Target:  5'- -cGCGuGGCCAACcugcgcugGGCCaaggGCCGcgGCc -3'
miRNA:   3'- uaCGU-CCGGUUG--------CCGGaa--CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 19976 0.68 0.414286
Target:  5'- -aGCAguuccuGGCCAaguACGGCCcUGCCGccGUc -3'
miRNA:   3'- uaCGU------CCGGU---UGCCGGaACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 30003 0.68 0.414286
Target:  5'- -aGC-GGCCcugGGCGGCCUUGgCGAcGUc -3'
miRNA:   3'- uaCGuCCGG---UUGCCGGAACgGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 6166 0.67 0.422866
Target:  5'- cAUGCAGG-CGACGGaggacucCCUggggccGCUGGUGCa -3'
miRNA:   3'- -UACGUCCgGUUGCC-------GGAa-----CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 36825 0.67 0.423827
Target:  5'- -gGCgAGGCCGGCGGCCgaggGgaGGUaGCg -3'
miRNA:   3'- uaCG-UCCGGUUGCCGGaa--CggCUA-CG- -5'
11561 5' -57.6 NC_003085.1 + 3200 0.67 0.423827
Target:  5'- -cGCGGGCCc-UGGCCcgaUGCCGcaagGCg -3'
miRNA:   3'- uaCGUCCGGuuGCCGGa--ACGGCua--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.