miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 22544 1.08 0.000439
Target:  5'- cAUGCAGGCCAACGGCCUUGCCGAUGCc -3'
miRNA:   3'- -UACGUCCGGUUGCCGGAACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 7540 0.77 0.105076
Target:  5'- -cGCGGGCCGAgGGgugugacgucgaCCUUGCCGcgGCc -3'
miRNA:   3'- uaCGUCCGGUUgCC------------GGAACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 12000 0.76 0.120121
Target:  5'- cUGC-GGCagCAGCGGCCUgacgcuggcgcaccUGCCGGUGCu -3'
miRNA:   3'- uACGuCCG--GUUGCCGGA--------------ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 46437 0.75 0.127832
Target:  5'- -cGCAGGCCGACGGCggaugaaCUUGCCGc--- -3'
miRNA:   3'- uaCGUCCGGUUGCCG-------GAACGGCuacg -5'
11561 5' -57.6 NC_003085.1 + 2370 0.75 0.143437
Target:  5'- -gGCAGGCCAGC-GCCgugcUGCCGGaGCc -3'
miRNA:   3'- uaCGUCCGGUUGcCGGa---ACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 27667 0.73 0.19953
Target:  5'- -cGCAGGCCGAaggUGGCCgaacugGCCGGguccgUGCc -3'
miRNA:   3'- uaCGUCCGGUU---GCCGGaa----CGGCU-----ACG- -5'
11561 5' -57.6 NC_003085.1 + 48520 0.72 0.204981
Target:  5'- -aGguGGCCuaugcucGCGGCCUcGCCGuccAUGCg -3'
miRNA:   3'- uaCguCCGGu------UGCCGGAaCGGC---UACG- -5'
11561 5' -57.6 NC_003085.1 + 8556 0.72 0.21056
Target:  5'- -gGCGGGCCAgcgccucgGCGGCCUU-CUGgcGCg -3'
miRNA:   3'- uaCGUCCGGU--------UGCCGGAAcGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 17833 0.72 0.234198
Target:  5'- -gGCAGGCCccuGgGGCagUGCUGGUGCc -3'
miRNA:   3'- uaCGUCCGGu--UgCCGgaACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 34620 0.71 0.239815
Target:  5'- -cGCGGGCCGgcugguggcgcucGCGGCCgcugugUUGCUGAcGCu -3'
miRNA:   3'- uaCGUCCGGU-------------UGCCGG------AACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 22241 0.71 0.239815
Target:  5'- -cGCAGGCCAacgagacgaaggaGCGGCagcagGCCGAguggaacgUGCg -3'
miRNA:   3'- uaCGUCCGGU-------------UGCCGgaa--CGGCU--------ACG- -5'
11561 5' -57.6 NC_003085.1 + 24377 0.71 0.246832
Target:  5'- -gGcCGGGCCAucaAUGGCCUggacggggccgUGCCGGUGg -3'
miRNA:   3'- uaC-GUCCGGU---UGCCGGA-----------ACGGCUACg -5'
11561 5' -57.6 NC_003085.1 + 26718 0.71 0.246832
Target:  5'- -cGCAGGgCGgugACGGCgCggcGCCGGUGCu -3'
miRNA:   3'- uaCGUCCgGU---UGCCG-Gaa-CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 18361 0.7 0.283766
Target:  5'- gGUGCAGGCCGugGaGUCgcugucccugcgcgUGCCugagGGUGCg -3'
miRNA:   3'- -UACGUCCGGUugC-CGGa-------------ACGG----CUACG- -5'
11561 5' -57.6 NC_003085.1 + 36744 0.7 0.28813
Target:  5'- uAUGCGcuaccuccccucGGCCGcCGGCCUcGCCGucgGCg -3'
miRNA:   3'- -UACGU------------CCGGUuGCCGGAaCGGCua-CG- -5'
11561 5' -57.6 NC_003085.1 + 493 0.7 0.295519
Target:  5'- -gGCgAGGCUGAgGGCCUgcguuuggaGCCGGUGUc -3'
miRNA:   3'- uaCG-UCCGGUUgCCGGAa--------CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 22861 0.7 0.303055
Target:  5'- -gGCGGGa--GCGGCCgUUGCCGcUGCc -3'
miRNA:   3'- uaCGUCCgguUGCCGG-AACGGCuACG- -5'
11561 5' -57.6 NC_003085.1 + 33911 0.7 0.310737
Target:  5'- -cGUGGGCCggUGGCCggGCgGAgaGCg -3'
miRNA:   3'- uaCGUCCGGuuGCCGGaaCGgCUa-CG- -5'
11561 5' -57.6 NC_003085.1 + 16871 0.69 0.318567
Target:  5'- cUGCGGGCCuccgcacacaacAAUGGCCacUGCUGgcGCg -3'
miRNA:   3'- uACGUCCGG------------UUGCCGGa-ACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 15174 0.69 0.334669
Target:  5'- cUGCGcugacGGCC--CGGCUgaGCCGGUGCg -3'
miRNA:   3'- uACGU-----CCGGuuGCCGGaaCGGCUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.