miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11561 5' -57.6 NC_003085.1 + 493 0.7 0.295519
Target:  5'- -gGCgAGGCUGAgGGCCUgcguuuggaGCCGGUGUc -3'
miRNA:   3'- uaCG-UCCGGUUgCCGGAa--------CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 1707 0.67 0.433497
Target:  5'- -gGCAGGCCAugACuacGCCUccucuguguggcUGCCG-UGCg -3'
miRNA:   3'- uaCGUCCGGU--UGc--CGGA------------ACGGCuACG- -5'
11561 5' -57.6 NC_003085.1 + 2370 0.75 0.143437
Target:  5'- -gGCAGGCCAGC-GCCgugcUGCCGGaGCc -3'
miRNA:   3'- uaCGUCCGGUUGcCGGa---ACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 2794 0.66 0.515095
Target:  5'- -gGCGGGgccuucuucgcCCGACuGGaCCUUuCCGAUGCg -3'
miRNA:   3'- uaCGUCC-----------GGUUG-CC-GGAAcGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 3200 0.67 0.423827
Target:  5'- -cGCGGGCCc-UGGCCcgaUGCCGcaagGCg -3'
miRNA:   3'- uaCGUCCGGuuGCCGGa--ACGGCua--CG- -5'
11561 5' -57.6 NC_003085.1 + 3803 0.67 0.433497
Target:  5'- --uCAGGCgGACGGUCaUGCUGAcGCc -3'
miRNA:   3'- uacGUCCGgUUGCCGGaACGGCUaCG- -5'
11561 5' -57.6 NC_003085.1 + 5895 0.69 0.34294
Target:  5'- cUGCAGGgCUGAC-GCCUccCCGAUGCg -3'
miRNA:   3'- uACGUCC-GGUUGcCGGAacGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 6166 0.67 0.422866
Target:  5'- cAUGCAGG-CGACGGaggacucCCUggggccGCUGGUGCa -3'
miRNA:   3'- -UACGUCCgGUUGCC-------GGAa-----CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 7540 0.77 0.105076
Target:  5'- -cGCGGGCCGAgGGgugugacgucgaCCUUGCCGcgGCc -3'
miRNA:   3'- uaCGUCCGGUUgCC------------GGAACGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 8556 0.72 0.21056
Target:  5'- -gGCGGGCCAgcgccucgGCGGCCUU-CUGgcGCg -3'
miRNA:   3'- uaCGUCCGGU--------UGCCGGAAcGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 8946 0.68 0.404878
Target:  5'- -cGCGuGGCCAACcugcgcugGGCCaaggGCCGcgGCc -3'
miRNA:   3'- uaCGU-CCGGUUG--------CCGGaa--CGGCuaCG- -5'
11561 5' -57.6 NC_003085.1 + 8950 0.67 0.433497
Target:  5'- -cGCAuGCCAgacGCGGUgaCguggaUGCCGAUGCa -3'
miRNA:   3'- uaCGUcCGGU---UGCCG--Ga----ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 10764 0.68 0.377481
Target:  5'- -cGCGGGCC-GCGcGCaggGCUGGUGUg -3'
miRNA:   3'- uaCGUCCGGuUGC-CGgaaCGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 11139 0.66 0.515095
Target:  5'- gGUGCAGGCCGA-GGU--UGgUGGUGUa -3'
miRNA:   3'- -UACGUCCGGUUgCCGgaACgGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 12000 0.76 0.120121
Target:  5'- cUGC-GGCagCAGCGGCCUgacgcuggcgcaccUGCCGGUGCu -3'
miRNA:   3'- uACGuCCG--GUUGCCGGA--------------ACGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 12802 0.66 0.515095
Target:  5'- -gGCAGGUgcuccacgcccUGACGGuCCggGCgGAUGCg -3'
miRNA:   3'- uaCGUCCG-----------GUUGCC-GGaaCGgCUACG- -5'
11561 5' -57.6 NC_003085.1 + 14606 0.69 0.358197
Target:  5'- cUGCAGGCCAccggggAguugguguccccucuCGGCCUugagguuguacuucuUGCgGAUGCg -3'
miRNA:   3'- uACGUCCGGU------U---------------GCCGGA---------------ACGgCUACG- -5'
11561 5' -57.6 NC_003085.1 + 14994 0.66 0.515095
Target:  5'- uUGgAGcGCC-ACGcGCUggcgGCCGGUGCg -3'
miRNA:   3'- uACgUC-CGGuUGC-CGGaa--CGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 15174 0.69 0.334669
Target:  5'- cUGCGcugacGGCC--CGGCUgaGCCGGUGCg -3'
miRNA:   3'- uACGU-----CCGGuuGCCGGaaCGGCUACG- -5'
11561 5' -57.6 NC_003085.1 + 15347 0.67 0.433497
Target:  5'- -cGCGGGCgCGGCGGgUgagcucgGCCGcgGCc -3'
miRNA:   3'- uaCGUCCG-GUUGCCgGaa-----CGGCuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.